PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15436
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 332aa    MW: 37912.8 Da    PI: 5.3
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15436genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.4e-11199246552
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                                kr +r   NR +A+rsR RK+++i eLe+ v +L+ae + L  ++  l
  Tp57577_TGAC_v2_mRNA15436 199 KRVKRILANRQSAQRSRVRKLQYISELERSVSSLQAEVSVLSPRVAYL 246
                                899**********************************98887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.0E-14195259IPR004827Basic-leucine zipper domain
PfamPF077162.0E-9196246IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.783197249IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.1E-13199250No hitNo description
SuperFamilySSF579591.85E-11199253No hitNo description
CDDcd147036.80E-23200250No hitNo description
PROSITE patternPS000360202217IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAQLPPKVPI PNMTPTWPEF SSHQKLPTLK TLLSPNASNF QNNQQNPSWV DEFLDFSSAR  60
RGVHRRSASD SVTFIETSMM EHCRRRDGDN EFERFDDEQL MSMFCVDEVS GKNMMPPPSA  120
TAALSSNSNP STPSDHNSIN DDKEEEEDEE KQQQLKHEFD EDEISEGKQE TARIVNDDDD  180
DDNNANRTNF SSQKITDPKR VKRILANRQS AQRSRVRKLQ YISELERSVS SLQAEVSVLS  240
PRVAYLDHQR LLLNVDNSAL KQRIAALAQD KIFKDAHQEA LKREIERLRQ VYHQQNNIKN  300
NNNATVVSPS PSPKPHCDND THIENEHLIN V*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15436
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400341e-133AC140034.14 Medicago truncatula clone mth2-17g19, complete sequence.
GenBankAC1716191e-133AC171619.9 Medicago truncatula clone mth2-160a1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607550.10.0basic leucine zipper 34
SwissprotQ9M2K41e-101BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A2K3N4B80.0A0A2K3N4B8_TRIPR; Transcription factor RF2b
STRINGAES847930.0(Medicago truncatula)
STRINGAES897470.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.16e-97bZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]