PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA15351
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 373aa    MW: 42098.4 Da    PI: 6.8726
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA15351genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.33.1e-32205258255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Tp57577_TGAC_v2_mRNA15351 205 PRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 258
                                9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.68E-16202259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-29203259IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-24205258IPR006447Myb domain, plants
PfamPF002492.5E-7206257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPHIDVPDLS LQISLPNSSP SSICTNEVDD LDSPFDIWKN NINDSTNTHQ GFKSHSDAFS  60
TSIKLSLTTT PSEVESPLMR KEFDRLRPFN GIPLYSDNNP SIIEKDSNFS LYPSCSSNSS  120
TFCGHNGFEG VKGISRFNGI TMESLRPQKF QYLNQQNQHH VLQQEQQHQK NQLGNMGNSD  180
FGNGFVRSRM IMPRQQSNKR NMRAPRMRWT SSLHNRFVHA VELLGGHERA TPKSVLELMD  240
VKDLTLAHVK SHLQMYRTVK NTDKPAASSD GDENFMSLTP PHNQNNNYNA SLDHEIGHTT  300
NNLWANSSSS KETWTEASSR DFDELSTHEI LSSQHNGNLP QGSNYIQSRS FKDQNIDCQK  360
NPNLEFTLGR SN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-18206260357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-18206260357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-18206260357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-18206260357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-18206260458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269|PubMed:11395775, ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:14561401, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928, ECO:0000269|PubMed:18849474, ECO:0000269|PubMed:20179097}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA15351
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269|PubMed:18849474}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452731.11e-180probable transcription factor KAN4
SwissprotQ93WJ97e-46KAN1_ARATH; Transcription repressor KAN1
TrEMBLA0A072UAE11e-178A0A072UAE1_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGXP_004513340.11e-162(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17563391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-48G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang T,Kerstetter RA,Irish VF
    APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis.
    J. Exp. Bot., 2014. 65(4): p. 1181-91
    [PMID:24449383]
  3. Mach J
    Getting in Shape? Leaves work it out with KANADI1.
    Plant Cell, 2014. 26(1): p. 4
    [PMID:24464293]
  4. Jun SE, et al.
    Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12.
    Mol. Cells, 2015. 38(3): p. 243-50
    [PMID:25518926]
  5. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  6. Xie Y, et al.
    Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways.
    Plant Physiol., 2015. 169(2): p. 1240-53
    [PMID:26246448]
  7. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  8. Singh A, et al.
    Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 3408
    [PMID:28611467]
  9. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]
  10. Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F
    Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers.
    Development, 2018.
    [PMID:29361563]