PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA15239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | G2-like | ||||||||
Protein Properties | Length: 100aa MW: 11459.2 Da PI: 10.8596 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 84.3 | 1.2e-26 | 20 | 71 | 1 | 52 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 +prlrWtpeLHe Fv+ ve LGG++kA Pk+il++m+vkgL ++h+kSHLQ Tp57577_TGAC_v2_mRNA15239 20 QPRLRWTPELHEYFVQTVEGLGGKHKASPKHILNMMQVKGLRISHIKSHLQV 71 59*************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.557 | 17 | 77 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-24 | 17 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.77E-12 | 18 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-19 | 21 | 71 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.6E-7 | 22 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
MKNNNNSKRS GVRKYHKSEQ PRLRWTPELH EYFVQTVEGL GGKHKASPKH ILNMMQVKGL 60 RISHIKSHLQ VHIYSSCSSL IFDQLSINPN LNILKQNLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-17 | 20 | 70 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 20 | 70 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 20 | 70 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 20 | 70 | 1 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-17 | 20 | 70 | 2 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA15239 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003553155.2 | 4e-34 | putative Myb family transcription factor At1g14600 | ||||
Refseq | XP_014517177.1 | 9e-34 | putative Myb family transcription factor At1g14600 | ||||
Refseq | XP_028212262.1 | 4e-34 | putative Myb family transcription factor At1g14600 | ||||
Swissprot | Q700D9 | 7e-21 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A072UUY9 | 8e-39 | A0A072UUY9_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein | ||||
STRING | GLYMA18G14071.1 | 2e-33 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9186 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 5e-25 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA15239 |