PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WOX | ||||||||
Protein Properties | Length: 254aa MW: 29095.4 Da PI: 8.011 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.4e-21 | 29 | 88 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+l+++ ++psaee+++++++l +++ ++V++WFqN++a++++ Tp57577_TGAC_v2_mRNA14971 29 SRWNPTKEQISMLENLYKQgIKTPSAEEIQQITARLrvygHIEGKNVFYWFQNHKARQRQ 88 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 114.9 | 3.9e-37 | 27 | 90 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi +Le+lyk+G++tP++eeiq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqkq Tp57577_TGAC_v2_mRNA14971 27 SSSRWNPTKEQISMLENLYKQGIKTPSAEEIQQITARLRVYGHIEGKNVFYWFQNHKARQRQKQ 90 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-13 | 23 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.677 | 24 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-7 | 26 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-9 | 29 | 88 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.4E-19 | 29 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.97E-7 | 30 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
LKMESDNNSN EMMMMMNENN GSSSSSSSSR WNPTKEQISM LENLYKQGIK TPSAEEIQQI 60 TARLRVYGHI EGKNVFYWFQ NHKARQRQKQ KQDNMAYFNR LLHRPHPIYP SPPIYPNAIC 120 TQYCVPQPQS QEFNYYPQNP KVLLPPAVSY RRNQAEKIMS NGMSNSICNN PLVYNENNMQ 180 KRISDYETLD LFPLHPTGIL EGKTTNNNVS SIVSVSADTH HSGSSHHVIN QDDGCHENQP 240 FFDFFNNSAG QRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14971 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505911.2 | 1e-104 | WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A2K3LSI8 | 1e-160 | A0A2K3LSI8_TRIPR; WUSCHEL-related homeobox 2-like protein | ||||
STRING | XP_004505911.1 | 1e-104 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-46 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14971 |