PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14515
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 578aa    MW: 63947.2 Da    PI: 4.9851
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14515genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS91.21.6e-282173201113
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                lv++Ll+cAea+++++l+la+al++++  las++  +m+++a+yf++ALa+r+++        + p et +++ s++l++   f
  Tp57577_TGAC_v2_mRNA14515 217 LVHTLLACAEAIQQENLKLADALVKHIGALASSQTGAMRKVASYFAQALARRIYG--------IYPDETIDSSFSDVLHM--HF 290
                                689****************************************************........55777776667777777..4* PP

                       GRAS  85 sevsPilkfshltaNqaIleavege.ervH 113
                                +e sP+lkf+h+taNqaIlea++g+ +++H
  Tp57577_TGAC_v2_mRNA14515 291 YESSPYLKFAHFTANQAILEAFAGAgRHLH 320
                                ************************966667 PP
2GRAS265.32e-81346570154374
                       GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                 +++l+++g++La++A+++gv+fef+ +v+++l+dl++++L+++pgEa+aVn+v++lh++l++++s+++    v +++k+++Pk
  Tp57577_TGAC_v2_mRNA14515 346 XTDALQQVGWKLAQLAQTIGVQFEFRGFVCNSLADLDPNMLEIRPGEAVAVNSVFELHTMLARPGSVDK----VFNTIKKINPK 425
                                5789*********************************************************99999999....*********** PP

                       GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpres.......eerikvErellgreivnvvacegaerrerhetlek 314
                                +v++veqea+hn++ F++rf+eal+yys+lfdsle + ++ +       +++  +++ +lgr+i+nvva eg +r+erhetl++
  Tp57577_TGAC_v2_mRNA14515 426 IVTIVEQEANHNGPVFVDRFTEALHYYSSLFDSLEGSCSNSNstgsgsvNQDLLMSELYLGRQICNVVAYEGVDRVERHETLNQ 509
                                **********************************99976665677777999********************************* PP

                       GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                Wr+r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++r+L+++SaW+
  Tp57577_TGAC_v2_mRNA14515 510 WRSRMGSAGFDPVHLGSNAFKQASTLLALFAgGDGYRVEENNGCLMLGWHTRSLIATSAWK 570
                                ************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120413.2E-3661127IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.5E-3461134No hitNo description
PROSITE profilePS5098547.973191549IPR005202Transcription factor GRAS
PfamPF035145.6E-26217320IPR005202Transcription factor GRAS
PfamPF035147.1E-79346570IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MKRDHQDSYG SGVTMNNNLN NKKNNNNKSF GECSSMQNNT SNTNGKETMW REEKDNGGGM  60
DELLAALGYK VRSSDMADVA QKLEQLEMVM GSAQEEGINH LSSDTVHYDP TDLYSWVQTM  120
LTELNPSTTD PQNPSSIFND DSQYDLSVIP GMAAYPPQNH NQIQNQTNEV EVSNSNKRLK  180
TWVEESELQD VLPTLSPAAE TTRPVVLVDS QETGVRLVHT LLACAEAIQQ ENLKLADALV  240
KHIGALASSQ TGAMRKVASY FAQALARRIY GIYPDETIDS SFSDVLHMHF YESSPYLKFA  300
HFTANQAILE AFAGAGRHLH YVPAVXXXXX XXXXXXXXXX XXXXXXTDAL QQVGWKLAQL  360
AQTIGVQFEF RGFVCNSLAD LDPNMLEIRP GEAVAVNSVF ELHTMLARPG SVDKVFNTIK  420
KINPKIVTIV EQEANHNGPV FVDRFTEALH YYSSLFDSLE GSCSNSNSTG SGSVNQDLLM  480
SELYLGRQIC NVVAYEGVDR VERHETLNQW RSRMGSAGFD PVHLGSNAFK QASTLLALFA  540
GGDGYRVEEN NGCLMLGWHT RSLIATSAWK LPLSESK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-4522456925377Protein SCARECROW
5b3h_D5e-4522456925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA14515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503135.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A2K3NKB70.0A0A2K3NKB7_TRIPR; Della protein gai-like protein
STRINGXP_004503135.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1