PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1438
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 595aa    MW: 68717.6 Da    PI: 9.5368
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1438genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.78.5e-1545128186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                               +W++  v +L+ea+++++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++        s +p+
  Tp57577_TGAC_v2_mRNA1438  45 EWSEGAVTTLLEAYESKWILRNRAKLKGQDWEDVAKHVssrsNSTKSPKTQTQCKNKIESMKKRYRSESASSDV------SAWPL 123
                               5*************************************88777778889999**************99988774......57999 PP

                  trihelix  82 fdqle 86 
                               +++l+
  Tp57577_TGAC_v2_mRNA1438 124 YSRLD 128
                               99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-1943128No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MCLLEEMNEN KDQQNPPTSQ ESPRKQNISI IGSGSTTNER LKRDEWSEGA VTTLLEAYES  60
KWILRNRAKL KGQDWEDVAK HVSSRSNSTK SPKTQTQCKN KIESMKKRYR SESASSDVSA  120
WPLYSRLDLL LRGTGQLSTT TTVVASHLQH VSSNNNNNHH GLVLLEPSSL VVSQGQEEAH  180
QSLAPTSVAN PPIAIAQNSH GSNGVDKLPK EDELETKSSD HIANKNPVDT DSSTPALYSE  240
KDEQRSKKRR MRTENNNNKR QKKEAMGIAE SIRWLAEVVV RSEQTRMETL KEIEKMRVEA  300
EAKRGEMEIK RTXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1260061e-145AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
GenBankCR9564021e-145CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598486.11e-162trihelix transcription factor ASIL1
TrEMBLA0A2Z6ME360.0A0A2Z6ME36_TRISU; Uncharacterized protein
STRINGAES687371e-162(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.13e-84sequence-specific DNA binding transcription factors