PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA14081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24921.3 Da PI: 6.774 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.1 | 1.8e-16 | 11 | 56 | 3 | 48 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 i n+s+r tf +R+ng++KK E+S+LC++e++ iifs+++ l e Tp57577_TGAC_v2_mRNA14081 11 ITNDSKRRGTFNRRKNGLIKKFDEISTLCGIEACAIIFSQNDPLPE 56 89**************************************988755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.409 | 1 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-23 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.39E-29 | 3 | 85 | No hit | No description |
PRINTS | PR00404 | 5.1E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-16 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.1E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MIRKKVNLAY ITNDSKRRGT FNRRKNGLIK KFDEISTLCG IEACAIIFSQ NDPLPEVWPS 60 PLGVQEVLSR FRSLSKMEQS KMMLNQESFL KQKIQKGQEQ LKKQRNENKR NEMTYLMFQC 120 LDSAQIIYTV GVNDLIALSW MIDHNLKQTE RCINETQANE VVENHAENVI GRESGMENNV 180 DAMQSEHWSL DFTNNNFGDV LPFGNGDNVP NGLWPY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA14081 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013460436.1 | 1e-109 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2K3N1E7 | 1e-159 | A0A2K3N1E7_TRIPR; Agamous-like mads-box protein agl80-like | ||||
STRING | XP_004500454.1 | 1e-99 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-46 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA14081 |