PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13737
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 335aa    MW: 37615.4 Da    PI: 9.2211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13737genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05156179123
                                EEETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                ++C+ Cg+ F  + +L++H++t H
  Tp57577_TGAC_v2_mRNA13737 156 FPCTACGEIFQKPNLLENHQSTnH 179
                                89*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.847156184IPR007087Zinc finger, C2H2
PROSITE patternPS000280158179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.107.0E-6182296IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563991.87E-6182293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MASSATFFNK FYYLFILIVH LGCFMFPTSD VAATGKKDNR QLLLLKKRKI SPLSQPSSPS  60
HPKFKTHKAI SSSWHFIKHL FSTNSCKAAT ATTTQSSPQS TSTSIITSTT AKSSQQSLIS  120
LVQTDPNFSD PPRKKQLESD ISADNNLFFP LRNDIFPCTA CGEIFQKPNL LENHQSTNHA  180
VSELTGSDPG HNIVQIIFKS GWPETNNFPN IHRVLKIHNS QKILSKFEEY RETVKSKAAR  240
NTRRRDERCI ADGNELMRFH CSTFLCELGH NGNSSICSQQ FCNICGIIKS GFSPKLDGIS  300
TLSTSWRANS SIPDDMEREF QFXXXXXEWC VHKT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13737
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460192.11e-178uncharacterized protein LOC25490836
TrEMBLA0A2K3LSG60.0A0A2K3LSG6_TRIPR; Zinc finger family protein
STRINGAES842731e-177(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.14e-75C2H2 family protein