PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13726
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 326aa    MW: 36875.9 Da    PI: 9.1254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13726genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-084286345
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                               +WT+ E +l+ +a + + ++   +W+++a++++ g++  ++ + + 
  Tp57577_TGAC_v2_mRNA13726 42 KWTPAENKLFENALAVYDKDtpdRWHKVAEMIP-GKSVIDVMNQYK 86
                               8********************************.*******99997 PP
2Myb_DNA-binding44.53.5e-14154198347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA13726 154 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 198
                                8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.6063892IPR017884SANT domain
SMARTSM007172.2E-93991IPR001005SANT/Myb domain
SuperFamilySSF466894.37E-124196IPR009057Homeodomain-like
PfamPF002496.7E-74287IPR001005SANT/Myb domain
CDDcd001671.02E-74288No hitNo description
Gene3DG3DSA:1.10.10.607.0E-44286IPR009057Homeodomain-like
PROSITE profilePS5129420.486147203IPR017930Myb domain
SuperFamilySSF466898.61E-17149202IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-17150202IPR006447Myb domain, plants
SMARTSM007175.3E-13151201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-12151198IPR009057Homeodomain-like
PfamPF002491.2E-12154198IPR001005SANT/Myb domain
CDDcd001675.90E-11154199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MKWEMEILSP NSHPHAPFVQ NSNNTNNWFL EDNSSIINRN TKWTPAENKL FENALAVYDK  60
DTPDRWHKVA EMIPGKSVID VMNQYKELEA DVCNIEAGLI PIPGYSTSTT TTTTTSPFTL  120
DWVNSSGYDG FRGINSKRGS SGRSPDQERK KGVPWTEEEH KLFLLGLKKY GKGDWRNISR  180
NFVITRTPTQ VASHAQKYFI RQLSGGKDKR RASIHDITTV NLTETSRTSP NSEDTKRLST  240
SPNHNNSMNI NKYSAVNAAS EMHFQPAMNA FNPAAHEQIF MSPYGVNNSY GLHRNHPLHE  300
SSYFGSQTQN MVFQMQSSQQ HYSHA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15431081176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13726
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460157.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-108DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2K3L8910.0A0A2K3L891_TRIPR; Transcription factor DIVARICATA-like protein
STRINGXP_004500230.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-84Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]