PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1366
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 268aa    MW: 29336.3 Da    PI: 6.72
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1366genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.92.9e-1592144355
                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                               ++kr rrk +NRe+ArrsRqRK a + eLe  v++L+ eN +L k+    +++
  Tp57577_TGAC_v2_mRNA1366  92 DIKRLRRKVSNRESARRSRQRKHAHLSELESQVEKLKLENATLYKQFTDTSQQ 144
                               58*****************************************9776665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.5E-1490154IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.32392155IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-1193145No hitNo description
PfamPF001706.4E-1293139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.5E-994129No hitNo description
CDDcd147021.81E-2295146No hitNo description
PROSITE patternPS00036097112IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.105.3E-4130164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MLPLMIELQD AVTSFSTCGG LTDSQNFTPK HSTITATIDS QSSIYGTVGS PVSANKPNSR  60
ENHTKGTTSG SSDPSDEDDE LGPCEQSTNP LDIKRLRRKV SNRESARRSR QRKHAHLSEL  120
ESQVEKLKLE NATLYKQFTD TSQQFHEADT NNRVLKSDVE ALRAKVKLAE DMVTRSSFTT  180
SLNNQFFHNQ YQSSTPPQLN ATNIRRMPHV SPTINVQQGN GASYGGVAVG EHNSNFVGFG  240
NLDMSNFNDA VDNGVLSNAL SCVTIWP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106112RRSRQRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1366
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501207.11e-160bZIP transcription factor RISBZ4-like
SwissprotQ6H5001e-57RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLA0A2K3PFC60.0A0A2K3PFC6_TRIPR; Basic leucine zipper 9-like transcription factor
STRINGXP_004501207.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.13e-46basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]