PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13514
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 419aa    MW: 45246.8 Da    PI: 6.5118
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13514genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-10261309355
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA13514 261 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 309
                                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.31E-11256313No hitNo description
SuperFamilySSF474595.63E-17256326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16259326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7261309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGGEENTMEF QHGNENIMTS EMDISSVSNM AKSSSEVPNH HHFLGSSAWD NPLISLSQAH  60
TFGGSSMVSH NDFANANSTY NPLVLENQGM SSTSHLVQYS NLGGMIHKIP SYGSGSFSEM  120
VGSFGQHGSG GDHVANTSGY PIPPQHYNHI KDAGNQRGHF NGEQSQVEDS VHEDGGTGSA  180
PGSGNRRKRG IDQNSTFSPN KNAEGDGVKD SPRKISDGSK EAEKKPKVEQ SGKQTKDNSP  240
SGDASKDNFI HVRARRGQAT NSHSLAERVR REKISERMRL LQELVPGCNK ITGKAVMLDE  300
IINYVQSLQQ QVEFLSMKLA TVNPELNFDV ERLLSKDILQ SRIGLGIGGF VPGMSSSHPF  360
PSASFQGNMS GLPSSSTQFP PLPQNALDHD FQNFYGMGYD SNTALDNLGP NGRLKPEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13514
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465951.10.0transcription factor bHLH74 isoform X1
TrEMBLA0A2K3P1810.0A0A2K3P181_TRIPR; Transcription factor bHLH74-like protein
STRINGXP_004498946.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-81bHLH family protein