PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13360
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 566aa    MW: 64147.5 Da    PI: 5.9854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15365411455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h   ErrRR+++N++f +Lr+++P++      K +K++iL  A+eY+++L+
  Tp57577_TGAC_v2_mRNA13360 365 NHVLSERRRRAKLNERFLTLRSMVPSN-----SKDDKVSILDDAIEYLSKLE 411
                                78999*********************8.....7****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-411153IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.647361410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-13364415No hitNo description
SuperFamilySSF474592.09E-17364422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17365422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-12365411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
LSWGEGYYNG EIKTRKTSQE VELSSDEIGL KRSEQLRDLF RSLKPTETSP PTKKPSAALS  60
PEDLTDTEWY YLVCMSFVFN IGQGLPGRAL ANGQPIWLMD AYSVDCKEFS RALLAKSASI  120
QTVVCFPFMK GVIEIGTTDM VMEDLSIIQQ IKTSLSNILT VDDPINGQVT LNSRNNEDVA  180
FDHIDHNAEL IPEVGNDIIN TTISRNGSST ALQTNQLPDE TFMVESWQIM DDDLIHNSMN  240
SSDCISQTIA SVPRSGEDCN NNQMTLGYPL SYDCHYQKIL SELLTSNDQL TMGMHFQNSH  300
QDSSFRVWNK RWPVDCQRPR QGNSQKLLKK MLLEVPRMHM DGLIESQEEN DYREATRLEP  360
DEGMNHVLSE RRRRAKLNER FLTLRSMVPS NSKDDKVSIL DDAIEYLSKL EKRIKELEAQ  420
REPIDIVESR SKKSHHDMLE RTCDDYYNNK TNNGKKPMMK KRKICDIGET RRQNCSDALK  480
GSSNSDVTVS MSDNGVVIEM KCPSKSGRIL EIMEAVNHLN MDFNSVQSTD SDGRLHVIIR  540
SKFKGPANAT TKRIKQALQK VASKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-12115147188Transcription factor MYC3
4rqw_B7e-12115147188Transcription factor MYC3
4rru_A1e-11115186227Transcription factor MYC3
4rs9_A7e-12115147188Transcription factor MYC3
4ywc_A1e-11115186227Transcription factor MYC3
4ywc_B1e-11115186227Transcription factor MYC3
4yz6_A7e-12115147188Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13360
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1995690.0KM199569.1 Trifolium repens isolate Tr_JAF13 bHLH protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024629222.10.0transcription factor EGL1 isoform X1
TrEMBLA0A2K3N2J90.0A0A2K3N2J9_TRIPR; Transcription factor GLABRA 3-like protein (Fragment)
STRINGXP_004503712.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-136bHLH family protein