PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA13172
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 320aa    MW: 36038.4 Da    PI: 7.9182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA13172genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10153200455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA13172 153 SHSLAERVRREKISERMKILQQLVPGC----DKITGKALVLDEIINYVQSLQ 200
                                8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.07E-11147204No hitNo description
SuperFamilySSF474591.01E-16147214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.732149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAAFEYQYQQ PFFVDSAPPY ITIKMSSQLD DQVHIINSSS CVDQNSKNSI CENLSPESSS  60
MVVDNLEKGE QVTQKVSSME KKRRVRNKSS LSSPLSKDAK EGRGKKQKKS SGEGMKGEEK  120
KKEEKKKDQK KNVEEPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK ILQQLVPGCD  180
KITGKALVLD EIINYVQSLQ NQVEFLSMKL ASVNPIFFDF SMDQDHQRLN SITSPSPTSG  240
PLQSVAICSS NHATPFADTS FHTADNDHYV LDYPTQVFLQ GQRSNTFFEH TDGPFWDVED  300
QRQKLLNPYG FGNNTCSLN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA13172
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312525e-79KT031252.1 Glycine max clone HN_CCL_23 bHLH transcription factor (Glyma04g37690.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630566.11e-152transcription factor bHLH137
SwissprotQ93W882e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A2K3N7N70.0A0A2K3N7N7_TRIPR; Transcription factor bHLH77-like protein (Fragment)
STRINGAET050421e-151(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]