PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA13102

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 452aa MW: 51644.4 Da PI: 6.9366

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA13102	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.4	1.3e-25	121	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt+++v+++i+a+++++e++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ Tp57577_TGAC_v2_mRNA13102 121 KWTDKMVRLMITAVSYIGEDITIDGgggngrrrfavlQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGt 204 7****************999764456677888899********************************************6 PP trihelix 72 tsessstcpyfdql 85 +++++++ +++d + Tp57577_TGAC_v2_mRNA13102 205 SCQVVENPSLLDVI 218 69999999888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-23	119	245	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MDMNLSQGGV GNSFGGFDLP GSIQVHHQAH HPHTIHQHQS HPHPRQGSSL HSSVHDGFPL 60 TMGTLQNCDQ TISMTDYSKG ERSKNSTSDD DEPSFNEDVF DGQHEGGRGK KGSSSPWQRV 120 KWTDKMVRLM ITAVSYIGED ITIDGGGGNG RRRFAVLQKK GKWKSVSKVM AERGYHVSPQ 180 QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPSLLDVIDY LSEKEKDDVR KILSSKHLFY 240 EEMCSYHNGN RLHLPHDPAL QCSMQLALRN RDDHDNDDIK RSHLGDHDED EQDAEIDEHD 300 DFRDNCASRG DSKGLFGRLG GSTKKLKQNQ CQEDANVSGH SLNCQDNFNK GSYPREQSVH 360 SDGNRVIPEN MRAAWLQKQW VDSRQAQLEE QKLQIQVEKL ELEKQRLKWQ RFSKKKDREL 420 EKLSLENERM KLENERMALE LKRKEMSIGL N*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MDMNLSQGGV GNSFGGFDLP GSIQVHHQAH HPHTIHQHQS HPHPRQGSSL HSSVHDGFPL  60
TMGTLQNCDQ TISMTDYSKG ERSKNSTSDD DEPSFNEDVF DGQHEGGRGK KGSSSPWQRV  120
KWTDKMVRLM ITAVSYIGED ITIDGGGGNG RRRFAVLQKK GKWKSVSKVM AERGYHVSPQ  180
QCEDKFNDLN KRYKKLNDML GRGTSCQVVE NPSLLDVIDY LSEKEKDDVR KILSSKHLFY  240
EEMCSYHNGN RLHLPHDPAL QCSMQLALRN RDDHDNDDIK RSHLGDHDED EQDAEIDEHD  300
DFRDNCASRG DSKGLFGRLG GSTKKLKQNQ CQEDANVSGH SLNCQDNFNK GSYPREQSVH  360
SDGNRVIPEN MRAAWLQKQW VDSRQAQLEE QKLQIQVEKL ELEKQRLKWQ RFSKKKDREL  420
EKLSLENERM KLENERMALE LKRKEMSIGL N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA13102

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004496474.1	0.0	uncharacterized protein LOC101496200
TrEMBL	A0A2K3PC30	0.0	A0A2K3PC30_TRIPR; Sequence-specific DNA binding transcription factor
STRING	XP_004496474.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5001	31	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-167	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA13102