PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12537
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 370aa    MW: 41445.3 Da    PI: 7.2296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12537genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06326226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                               k++lC+ffa  G C  G+ C F+H+
  Tp57577_TGAC_v2_mRNA12537  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                               99****6666.*************5 PP
2zf-CCCH27.45.8e-093454526
                               --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                               +C f+++ G C yG+rC++ H+
  Tp57577_TGAC_v2_mRNA12537 34 ICTFYQK-GVCAYGSRCRYDHV 54
                               7******.*************7 PP
3zf-CCCH18.92.7e-06139160426
                                ---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                ++C+ fa+ G C++G++C+  Hg
  Tp57577_TGAC_v2_mRNA12537 139 PICS-FAAAGNCPRGEQCPHVHG 160
                                6788.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-7326IPR000571Zinc finger, CCCH-type
PfamPF156631.6E-7764No hitNo description
PROSITE profilePS5010314.3892956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056135162IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026136161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.16E-13193268No hitNo description
Gene3DG3DSA:3.30.40.109.1E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136392.1E-6203262IPR001841Zinc finger, RING-type
CDDcd001620.0019203263No hitNo description
SMARTSM001844.5E-7204261IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.224204262IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.225291320IPR000571Zinc finger, CCCH-type
SMARTSM003560.07291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYQK GVCAYGSRCR YDHVKASRSP  60
SSTPSSSIIE HQPLVSESLV LGNTRITSND VATAAEFSLF NSPYVVPSEP AWNQESANHD  120
FLREDDVGQL LITSPSDIPI CSFAAAGNCP RGEQCPHVHG DICPSCGRQC LHPFRPEERE  180
EHMKSCENKQ KHLEALKKSQ EVECCVCLER VLSKPTAAER KFGVLSECDH PFCISCIRNW  240
RSSNPTLGMD VNSTLRACPI CRKLSYFVVP SVIWYATSEE KQEIVNTYKA KLKSIDCKHF  300
DFGDGNCPFG TSCFYKHAYR DGRLEEVTLR HLGAADGDTI ISKDIRFLFI FTWFLCLALC  360
TLTFPISLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12537
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465660.0AC146566.7 Medicago truncatula clone mth2-71p5, complete sequence.
GenBankAC2035450.0AC203545.6 Medicago truncatula clone mth2-60c13, complete sequence.
GenBankCU4685740.0CU468574.5 M.truncatula DNA sequence from clone MTH2-69A16 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513289.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-168C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A2K3NXZ00.0A0A2K3NXZ0_TRIPR; E3 ubiquitin-protein ligase makorin-like protein
STRINGAES693770.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-159C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]