PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA12433

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Protein Properties

Length: 242aa MW: 28025.3 Da PI: 7.3688

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA12433	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.5	1.5e-10	136	215	6	77
..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 ++ ++rl + k+++e++ +++ e ++ ++ +d +gr++++k++++ k+ +++ ++GW++F +++ L+++ Tp57577_TGAC_v2_mRNA12433 136 MSDLKVDQNRLLMNKSHVEDYfvpllregEENIEDGINVVAYDMQGRTFSMKFKFWSKKFHVLTGTGWRNFFEEHSLQAN 215 33334556899**************9866667999*****************9999999**********965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-12	130	228	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.73E-12	130	233	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.57E-12	132	240	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MDFNRDEREV AAILLHMPML HIAQVMEKRK NVKITLSGKP ISKIRKEINN NNSVDAMSHI 60 NIPDVVMENN NVHAMSQINI SDIVMENNNV HAMPQINIPD VVMENVNNPL DIPTIPGVPN 120 NNILQCYKPF EKKPMMSDLK VDQNRLLMNK SHVEDYFVPL LREGEENIED GINVVAYDMQ 180 GRTFSMKFKF WSKKFHVLTG TGWRNFFEEH SLQANRDHVK VWMFRHSQTN NICFALGIRR 240 E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA12433

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003598455.1	1e-57	putative B3 domain-containing protein At4g03170
TrEMBL	A0A2K3LR19	1e-125	A0A2K3LR19_TRIPR; Ap2 b3-like transcriptional factor family protein
STRING	AES68698	1e-56	(Medicago truncatula)
STRING	AES68706	5e-57	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4148	19	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	2e-17	B3 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA12433