PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA12311
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 140aa    MW: 15983.1 Da    PI: 5.3572
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA12311genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.92.6e-181055449
                               -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               ++   rqvtfskRr+ ++ KA+ LS+LC+aev v++fs+++k y +
  Tp57577_TGAC_v2_mRNA12311 10 KDPYMRQVTFSKRRTSLFNKANKLSILCGAEVDVVVFSPRNKSYSF 55
                               56678*************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004041.1E-14121IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-21172IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-22158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.437159IPR002100Transcription factor, MADS-box
CDDcd001201.32E-23258No hitNo description
PfamPF003191.3E-191155IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-142136IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-143657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRRKIEIVK DPYMRQVTFS KRRTSLFNKA NKLSILCGAE VDVVVFSPRN KSYSFGHPRV  60
DVVAAKYLQQ DPKSSDSQGD PSYDASNMEE LNLELAEVLD QICEGEKEAK NRDEILKQNS  120
MTTLFELEKL RDSYKELQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA12311
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467229.18e-67agamous-like MADS-box protein AGL29
TrEMBLA0A2K3K8098e-96A0A2K3K809_TRIPR; Agamous-like mads-box protein agl61-like
STRINGXP_004504539.16e-63(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-27AGAMOUS-like 61