PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11931
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family AP2
Protein Properties Length: 478aa    MW: 52800.1 Da    PI: 8.3391
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11931genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17139188155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Tp57577_TGAC_v2_mRNA11931 139 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 188
                                78*******************......55************************998 PP
2AP241.92.5e-13231281155
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a++k +g
  Tp57577_TGAC_v2_mRNA11931 231 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAALKCNG 281
                                89********.7******...5...334336**********99**********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16139196IPR016177DNA-binding domain
PfamPF008472.2E-9139188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-17140196IPR001471AP2/ERF domain
PROSITE profilePS5103217.82140196IPR001471AP2/ERF domain
CDDcd000182.48E-11140195No hitNo description
SMARTSM003803.0E-31140202IPR001471AP2/ERF domain
CDDcd000181.26E-26231291No hitNo description
SuperFamilySSF541717.85E-17231290IPR016177DNA-binding domain
PfamPF008477.1E-9231281IPR001471AP2/ERF domain
PROSITE profilePS5103215.725232289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-16232289IPR001471AP2/ERF domain
SMARTSM003801.3E-32232295IPR001471AP2/ERF domain
PRINTSPR003675.0E-6233244IPR001471AP2/ERF domain
PRINTSPR003675.0E-6271291IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLDLNLDSTQ NDDSIMMMEK LPEASSGTSN SSIVNAEGSS NVTGDEDSCS TRAGDGFTFN  60
FGILKVEGGN EVVATKELFP VSSGNWSGEC STMMIPAKKS MMDLSMDHNR GVQNGVVQVQ  120
VQQRPQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARAYD  180
RAAIKFRGLD ADINFNLVEY EEDMNQMKNL SKEEFVHILR RHSNGFSRGS SKYRGVTLHK  240
CGRWEARMGQ LLGKKYIYLG LFDSEVEAAR AYDKAALKCN GREAVTNFEP STYENELKPE  300
AINGGGSHNL DLNLGMATPG HEPKENRGYR QFQAVPYNLH PGRNLKMETN VNSVIGDPSL  360
KKLVVTEQRP SMWNATFSSF FPNEERAERI GIDPLKGLPN WAWQGHNSQG TASPVPQFST  420
AASSGFSISA TFPPNAIFQT QSMNSIPQTL CFSPSMAPGT NASPYYYQVK SSQAPPP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465270.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AXC31e-104AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2K3PEI10.0A0A2K3PEI1_TRIPR; Ethylene-responsive transcription factor rap2-7-like protein
STRINGAES673880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-117related to AP2.7