PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 342aa MW: 37776.3 Da PI: 8.4935 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.9 | 1.5e-42 | 27 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrrkC+++Cv+apyfp ++p++fa+vhk+FGasnv kll++l+ ++r+da++sl+yeAear+rdPvyG+vg+i+ lq Tp57577_TGAC_v2_mRNA11730 27 PCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQ 110 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 ++l+ + el+ +k+e Tp57577_TGAC_v2_mRNA11730 111 HKLRAIQGELNNAKKE 126 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.483 | 26 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-42 | 27 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
LVSERRRGRE KKKLRDRQKM SSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DNPQRFAYVH 60 KVFGASNVAK LLNELNATQR DDAVKSLAYE AEARLRDPVY GCVGLISLLQ HKLRAIQGEL 120 NNAKKELATY IGPQALQSIP ATMLQQQQQH NNPFGGNSLY PYNGNVPAVT AANQMVIRDP 180 QPPLQQQILD PHQLAVAVAA REQQDIFRTF ENQQQQQEFL RFSGGFDVDS VSNSAGGFTP 240 VSAGTGVGGG VVASDQLAPS LALGSFDNTY HHMQQSQQGQ GESHPHHQQH HNHHLPLQAQ 300 LLLPPQQKQA QPQTQHSPLI HHHQQQTESE ECRSVGLGPS C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-46 | 21 | 143 | 5 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-46 | 21 | 143 | 5 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 14 | REKKKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11730 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU013515 | 0.0 | CU013515.2 Medicago truncatula chromosome 5 clone mth2-106f22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004511963.1 | 1e-147 | LOB domain-containing protein 36-like | ||||
Refseq | XP_004511964.1 | 1e-147 | LOB domain-containing protein 36-like | ||||
Refseq | XP_027193026.1 | 1e-147 | LOB domain-containing protein 36-like | ||||
Swissprot | Q9FKZ3 | 2e-68 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2K3N0C6 | 0.0 | A0A2K3N0C6_TRIPR; LOB domain-containing protein 36-like | ||||
STRING | XP_004511963.1 | 1e-146 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2353 | 34 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 7e-70 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11730 |
Publications ? help Back to Top | |||
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