PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11544
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 243aa    MW: 27199.6 Da    PI: 9.29
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11544genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-12117158351
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                                 +GV++  k+ +W A I++      +k+++lg+f + eeAa+++++a+ 
  Tp57577_TGAC_v2_mRNA11544 117 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTFASQEEAARLYDRAAF 158
                                79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.401101171IPR001471AP2/ERF domain
PfamPF008478.9E-7116159IPR001471AP2/ERF domain
SMARTSM003805.1E-6116173IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-10117161IPR016177DNA-binding domain
CDDcd000181.42E-11118169No hitNo description
Gene3DG3DSA:3.30.730.102.0E-8119163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGNNSFV TPLPLYCENL ARFENSSQNA NPKSEQSVVS DIVSVVLDST  60
GTQNSQNTVV KDESGSSDVS GSSPSKEQPS QQSIGPPVKR RKRHSRKHRE NQEPCLMRGV  120
YFKNMKWQAA IKVDKKQIHL GTFASQEEAA RLYDRAAFMC GREPNFELSE EEKRELSKFK  180
WEEFLTKTRQ TITCKKHKKS RSPGLVEVEP SSNGVDCGGK QIVTDFSVSG EAEQEIDVSR  240
NL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11544
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444108.11e-127ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627868.11e-127ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627869.11e-127ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_024627870.11e-127ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP92e-50ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2K3MN651e-178A0A2K3MN65_TRIPR; Ethylene-responsive transcription factor-like protein at4g13040-like protein
STRINGXP_004510251.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-41ERF family protein