PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11531
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 383aa    MW: 44699.8 Da    PI: 9.3488
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11531genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.2e-18239329194
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ff+ ++++ + ++++l +p +fa++h +  e+   + + d + r+W+v l++ +  ++y l +GW++F+ +n+Lk gD++vF l
  Tp57577_TGAC_v2_mRNA11531 239 FFTSMIHKTYIERDILGIPIEFAKTHLYRMEGRNAILFVD-QERTWNVDLKI-GANNQYKLVDGWSKFCADNNLKLGDVCVFIL 320
                                8999**********************66655555666666.99*******54.444579************************9 PP

                                -SSSEE..EE CS
                         B3  85 dgrsefelvv 94 
                                ++  +++  +
  Tp57577_TGAC_v2_mRNA11531 321 KK-CKGTISF 329
                                76.5554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.82E-715106No hitNo description
SuperFamilySSF1019366.28E-1515107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.65615109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-1315107IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.001116109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-21232335IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-20234335IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.6E-15239337IPR003340B3 DNA binding domain
PfamPF023623.2E-15239330IPR003340B3 DNA binding domain
PROSITE profilePS5086314.804239337IPR003340B3 DNA binding domain
CDDcd100172.02E-16251335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MASQELNHET NIGVHFIKII LQTSLQQGKL RVPISFVRRH WKGITNPVTL RLPNSTEKKV  60
SWEKTSDYDV WFCNGWREFA NYLSLSDLQI LVFQYQGNSL FSVIGFGKCG LEIKYPLSET  120
SEKAEEVEES DCSLKIIEET PLLRGKRSKS SSRSSKICKK IKIIPNEQKE YKHEKRKVQE  180
HPRFPNFKDM DIGVVTYLLF IYFFTILKFL AGSSSDDLKE RSRDLHEKVK KKFKSDKDFF  240
TSMIHKTYIE RDILGIPIEF AKTHLYRMEG RNAILFVDQE RTWNVDLKIG ANNQYKLVDG  300
WSKFCADNNL KLGDVCVFIL KKCKGTISFQ VVIFSLEKDM KTPYFQVFVL FLTPPSFFEF  360
DHVVELLQHV AHFVDMIQIQ RL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11531
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636868.11e-154B3 domain-containing protein REM8
TrEMBLA0A396IHE61e-153A0A396IHE6_MEDTR; Putative transcription factor B3-Domain family
TrEMBLG7JLI41e-152G7JLI4_MEDTR; B3 DNA-binding domain protein
STRINGAES918791e-153(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.14e-17B3 family protein