PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 279aa MW: 31347.5 Da PI: 8.2972 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 80 | 122 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T eE++l+v++++ G++ W+ Ia+ ++ gRt++++k+ w++ Tp57577_TGAC_v2_mRNA11477 80 DNFTSEEEDLIVKLHAAIGSR-WSIIAQQLP-GRTDNDVKNNWNT 122 68*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.45E-16 | 60 | 132 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-4 | 60 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.721 | 74 | 128 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-11 | 78 | 126 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.38E-8 | 81 | 124 | No hit | No description |
Pfam | PF00249 | 6.3E-12 | 81 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-18 | 87 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
ITWLGLQVVK KPVSSKAVYG SQKTMQRHLR LYRSMVLVIG LLSPKKQISS REEYVYAGVK 60 RCGKSCRLRL SSYIPDLKHD NFTSEEEDLI VKLHAAIGSR WSIIAQQLPG RTDNDVKNNW 120 NTKLKKKLSQ MGIDPVTHKP FSKLIADYGN IGATTTATDS QQRLIRNTND RSMQLRTKME 180 TSMFEEGCLS STLSTSSACS STSTQGTTFV APFSWNDFLT EDANFAAPSN NLQEEQYLEK 240 KKEVMSSSSD VSFVEAILDQ ENEMFLSFPE LLEEPSNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-15 | 61 | 128 | 40 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00148 | DAP | Transfer from AT1G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11477 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013459501.1 | 1e-97 | transcription factor MYB35 | ||||
TrEMBL | A0A2K3PB44 | 1e-153 | A0A2K3PB44_TRIPR; Transcription repressor MYB 4-like protein (Fragment) | ||||
STRING | XP_004513209.1 | 4e-91 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 3e-35 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11477 |