PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA11271
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 163aa    MW: 18680.5 Da    PI: 8.8981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA11271genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-14949242
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                               ++ ++s+r++t+ kR++ + KK  EL +LC+++++viifs+
  Tp57577_TGAC_v2_mRNA11271  9 FVASDSQRKITYNKRKKSLTKKIDELTTLCGVDACVIIFSN 49
                               56799**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.026149IPR002100Transcription factor, MADS-box
CDDcd002667.29E-20185No hitNo description
SMARTSM004327.4E-14159IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-21295IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-7222IPR002100Transcription factor, MADS-box
PfamPF003193.4E-151149IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-72237IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-73758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MRNKLKLAFV ASDSQRKITY NKRKKSLTKK IDELTTLCGV DACVIIFSNF HLDPEIWPSQ  60
SSEVQRILTK FKTYSEFEQG KKKLNHETYL MKRITKSREQ LAKLEKNNGE LQKSLILYQC  120
LANEIPVDTL NLDVLNDVDC EINRKLAEIA SKENEVDPNA TS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA11271
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013460430.17e-74agamous-like MADS-box protein AGL80
TrEMBLA0A2K3L3251e-115A0A2K3L325_TRIPR; Agamous-like mads-box protein agl80-like
STRINGXP_004500453.19e-68(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1630237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-31AGAMOUS-like 80