PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA1109
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 438aa    MW: 49644.4 Da    PI: 9.7377
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA1109genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.65.9e-24354413260
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                               +D + WrKYG+K+vkgs++pr+YY+C++  +C ++k ve+s++ +++ ++tY g Hnhek
  Tp57577_TGAC_v2_mRNA1109 354 KDCWVWRKYGRKPVKGSPHPRNYYKCSTLkDCLARKLVEQSKTIENTYVVTYIGVHNHEK 413
                               79************************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-23344414IPR003657WRKY domain
PROSITE profilePS5081126.98348414IPR003657WRKY domain
SuperFamilySSF1182909.68E-22348414IPR003657WRKY domain
SMARTSM007747.3E-26353413IPR003657WRKY domain
PfamPF031062.9E-19355412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDNGEWDLMA IVHSCKATTS TNPPITFETS PQPKTPIPTT TTTNNGIFTQ NTIPSYFNDF  60
TVIQENHPVP VTPLKPTDFI DLEKLKINFN HNNTLDIPTT ISPNPTTSSL ISTTTTPTSS  120
TTIIPTYITA APFESVYNHQ LVPQQPLRQH NQLPVPQTPI TITTNNIIRP QNTTPSYFND  180
FTVIQENNSI PISPFKQTNY IDLEKFRFNF NPLQISTLNP NSTTITTPTI ITTPTASIPT  240
LIPXXXXXXX XXXXXXXXTT NIFSPNSAIT IPASSTTTLL THIPTSHFDR AYNHPSVPQQ  300
PPRHHNQLPN LQPETSSRVL PNIYPQQPKC KSRKRKNYKP VSLVCQVKKE NLSKDCWVWR  360
KYGRKPVKGS PHPRNYYKCS TLKDCLARKL VEQSKTIENT YVVTYIGVHN HEKPLVDDWN  420
SRRLRYYRSF QSSQLGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-123514141577Probable WRKY transcription factor 4
2lex_A2e-123514141577Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA1109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K3LTI61e-169A0A2K3LTI6_TRIPR; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.17e-28WRKY DNA-binding protein 27