PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA11022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WOX | ||||||||
Protein Properties | Length: 289aa MW: 31010.3 Da PI: 7.9956 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.1 | 2e-15 | 30 | 90 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Tp57577_TGAC_v2_mRNA11022 30 RSRWTPKPEQILILESIFNSgMVNPPKDETIRIRKLLekfgAVGDANVFYWFQNRRSRSRR 90 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.6 | 1.6e-34 | 29 | 92 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Tp57577_TGAC_v2_mRNA11022 29 VRSRWTPKPEQILILESIFNSGMVNPPKDETIRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 92 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-14 | 24 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.337 | 26 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-9 | 28 | 98 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.0E-7 | 28 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.8E-13 | 30 | 90 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MEDQQQKQHV QCQSSNTNNP NNIERSETVR SRWTPKPEQI LILESIFNSG MVNPPKDETI 60 RIRKLLEKFG AVGDANVFYW FQNRRSRSRR RQRQMQAAAQ LSGGSANPYH QYHCSTNSAN 120 SLSLGATIGF GGSSNFTMNS SSCNSSYNNN FSGSSSSCGL GVGLGVGVGI GGDEGFGGLF 180 LGSTPINFSE TDHTSAASSA LYPSNHASNF NFHSGFGGSN VSSLITVLIN GVATEVPRGA 240 IDMKSMFGEN VMLVHSSGVL VPTNDFGFLM QSLQNGESYY LVSKQTQA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA11022 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489665.1 | 1e-123 | WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 4e-68 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2K3L054 | 1e-176 | A0A2K3L054_TRIPR; WUSCHEL-related homeobox 11-like protein | ||||
STRING | XP_004489665.1 | 1e-122 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 9e-34 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA11022 |
Publications ? help Back to Top | |||
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