PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10847
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 423aa    MW: 46940 Da    PI: 6.7089
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10847genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.38.4e-3449103155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Tp57577_TGAC_v2_mRNA10847  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.26846106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-3247104IPR009057Homeodomain-like
SuperFamilySSF466891.33E-1748103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-2549104IPR006447Myb domain, plants
PfamPF002491.9E-951102IPR001005SANT/Myb domain
PfamPF143792.5E-23136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MYHPTNVPDL SLIGSNSLVH GQHIDSGRST MDPGNGGNSL ANNSNVNSKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDEGKKADK  120
KETGDMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ  180
QRLSGVLSPG SGVAAPTPGD VCQQELDNKT EPATPDPEKA AKEHAPAKSL SVESFSSHHE  240
PMTPDSGCQV GSPADSPNGE RSTKKQRVSV EGGAPLXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX ESSMPSXXXQ TTVFLTHDHF DPSLGMSTRS GEEFDKLGVG  420
NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-2349106158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-2349106259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1436180.0BT143618.1 Medicago truncatula clone JCVI-FLMt-6M11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486394.11e-180myb family transcription factor PHL7
RefseqXP_004486395.11e-180myb family transcription factor PHL7
RefseqXP_012569914.11e-180myb family transcription factor PHL7
SwissprotQ9SJW01e-110PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2K3P3P70.0A0A2K3P3P7_TRIPR; Two-component response regulator EHD1
STRINGXP_004486394.11e-180(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.15e-89G2-like family protein