PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA10528
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 583aa    MW: 64800.3 Da    PI: 7.4768
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA10528genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-154385145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                               +g+W +eEd +l++a+k+ G++ W  Ia++++ gR ++++k+rw+
  Tp57577_TGAC_v2_mRNA10528 43 KGPWNEEEDIILIEAHKEVGSK-WVEIAKRLP-GRPENSIKNRWN 85
                               79********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.709137IPR017930Myb domain
SMARTSM0071711139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-16245IPR009057Homeodomain-like
SuperFamilySSF466897.03E-261692IPR009057Homeodomain-like
PROSITE profilePS5129422.873892IPR017930Myb domain
SMARTSM007172.9E-154290IPR001005SANT/Myb domain
PfamPF002492.4E-144385IPR001005SANT/Myb domain
CDDcd001671.55E-114588No hitNo description
Gene3DG3DSA:1.10.10.608.4E-214689IPR009057Homeodomain-like
PRINTSPR006334.3E-11258274IPR000408Regulator of chromosome condensation, RCC1
Gene3DG3DSA:2.130.10.301.3E-83265577IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
SuperFamilySSF509851.22E-76265576IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
PRINTSPR006334.3E-11290303IPR000408Regulator of chromosome condensation, RCC1
PfamPF004151.5E-7307355IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001213.318307358IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006334.3E-11309325IPR000408Regulator of chromosome condensation, RCC1
PfamPF004156.6E-7358413IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001213.218359416IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006334.3E-11403419IPR000408Regulator of chromosome condensation, RCC1
PfamPF004153.8E-11416465IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001216.514417468IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006334.3E-11419433IPR000408Regulator of chromosome condensation, RCC1
PROSITE patternPS006260455465IPR000408Regulator of chromosome condensation, RCC1
PfamPF004153.2E-12468517IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001215.65469520IPR000408Regulator of chromosome condensation, RCC1
PRINTSPR006334.3E-11510528IPR000408Regulator of chromosome condensation, RCC1
PfamPF004157.3E-7520576IPR000408Regulator of chromosome condensation, RCC1
PROSITE profilePS5001212.896521579IPR000408Regulator of chromosome condensation, RCC1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008380Biological ProcessRNA splicing
GO:0032981Biological Processmitochondrial respiratory chain complex I assembly
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
LLILLVDLLG PKDWYYIAKF IDGKIGKQCW ERWHNHLKPN IRKGPWNEEE DIILIEAHKE  60
VGSKWVEIAK RLPGRPENSI KNRWNATKRS LNAEMMQNKS NDRSKGKLLQ NYIREVIIQE  120
GEREMMSKMY IEDGEQDTIC KSCESDFDPK DWATQEDELT KSKQGSESDY LLPEYHHRQS  180
AITELMAMIR HHXXXXXXXX XXXXXXXXXH SPLMFLLLHH HHQNPHTLHH RHPRLNNNPT  240
PLLGQRRLRP TRRRRRRNSS LPISSDGGRL GLGHENSLFV PTLNPHIDNV SSVALGGLHS  300
VALTSAGEVF TWGYGGFGAL GHSVYHRELF PRLVKGSWEG TIKHIATSGA HTAAVTESGE  360
LYIWGREEGE GRLGLGPGRG PDHAGGLSIP CKVKELPFPV AAVCCGGFFT MALTEEGQLW  420
NWGANSNYEL GRGDKIGGWK PRPVPSLEKV RIIQIASGGY HSLALTDDGK VLSWGHGAQG  480
QLGHGSVESK KIPSFVEALA HEHIIYISCG GSSSAAVTDE GKLYMWGNAN DSQLGVPGLP  540
EIQSCPVEVN FLMEDDGLGL HKVLSIANGA SHAICLALRE SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dnu_A2e-352665811369AT5g63860/MGI19_6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248256RPTRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtRegulates DNA damage response (DDR) synergistically with ATM (PubMed:28262819). Together with ATM, involved in the splicing of the ND2/NAD2 mRNA (PubMed:21623974, PubMed:28262819). Required for the accumulation of mitochondrial respiratory chain complex I (PubMed:21623974). Negative regulator of plant responses to abscisic acid (ABA) (PubMed:28613105). May have a pivotal role in vegetative growth and the phase transition from vegetative to reproductive growth (PubMed:28262819). {ECO:0000269|PubMed:21623974, ECO:0000269|PubMed:28262819, ECO:0000269|PubMed:28613105}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA10528
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Reduced by methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:28262819}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515216e-86AC151521.2 Medicago truncatula chromosome 7 clone mte1-49d11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202686.10.0RCC1 domain-containing protein RUG3, mitochondrial
SwissprotQ9FJG91e-147RUG3_ARATH; RCC1 domain-containing protein RUG3, mitochondrial
TrEMBLA2Q2N30.0A2Q2N3_MEDTR; Putative regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
STRINGXP_004492220.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-38myb domain protein 118
Publications ? help Back to Top
  1. Kühn K, et al.
    The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana.
    Plant J., 2011. 67(6): p. 1067-80
    [PMID:21623974]
  2. Su C, et al.
    RUG3 and ATM synergistically regulate the alternative splicing of mitochondrial nad2 and the DNA damage response in Arabidopsis thaliana.
    Sci Rep, 2017. 7: p. 43897
    [PMID:28262819]
  3. Su C, et al.
    RUG3 is a negative regulator of plant responses to ABA in Arabidopsis thaliana.
    Plant Signal Behav, 2017. 12(6): p. e1333217
    [PMID:28613105]