PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 15259.9 Da PI: 10.6603 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.8 | 1.2e-19 | 16 | 93 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l +p+kf++++g++ +k + l++++g++W+++l k++g+++++kGWkeF+k + L g ++Fk++++s f +v++f+k Tp57577_TGAC_v2_mRNA10525 16 LDVPRKFVKKYGKS--LPKAIYLKTPNGKKWKLNL--VKNDGKIWFEKGWKEFAKYHSLAHGHLLLFKYERTSHF--NVHIFEK 93 679********965..8999***************..********************************999999..9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.508 | 1 | 94 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-13 | 8 | 94 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-23 | 14 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-24 | 15 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.4E-17 | 16 | 93 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.31E-17 | 16 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MKLWIDPTPL PQFDPLDVPR KFVKKYGKSL PKAIYLKTPN GKKWKLNLVK NDGKIWFEKG 60 WKEFAKYHSL AHGHLLLFKY ERTSHFNVHI FEKNALEIKY PSKRVEAKRV HYNGKGNKPP 120 INEANIFQT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10525 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003622666.3 | 3e-50 | B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A2Q2N6 | 7e-51 | A2Q2N6_MEDTR; Putative transcription factor B3-Domain family | ||||
STRING | AES78884 | 1e-49 | (Medicago truncatula) | ||||
STRING | AES78894 | 1e-49 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 9e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10525 |