PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA10497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20482.3 Da PI: 9.4683 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.2e-50 | 20 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyW 83 pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLp+k+++ +eke+yfF+ r +ky+++ r+nr+t sg+W Tp57577_TGAC_v2_mRNA10497 20 LPGFRFHPTDEELVGFYLRRKVDKKSLRI-ELIKQIDIYKYDPWDLPSKISSsmGEKECYFFCLRGRKYRNSIRPNRVTGSGFW 102 69***************************.89***************6554434889*************************** PP NAM 84 katgkdkevlsk......kgel..vglkktLvfykgrapkgektdWvmheyrl 128 katg dk+++s+ + + +glkk+Lv+y+g+a kg+ktdW+mhe+rl Tp57577_TGAC_v2_mRNA10497 103 KATGIDKPIYSSsvkessS--HdcIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 153 ***********86655443..066***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.45E-51 | 18 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.531 | 19 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-25 | 21 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDIVTKLDNF DDKKEDEIVL PGFRFHPTDE ELVGFYLRRK VDKKSLRIEL IKQIDIYKYD 60 PWDLPSKISS SMGEKECYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDKP IYSSSVKESS 120 SHDCIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPKGKTS NNQLHNLSND VQEAVSD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-45 | 15 | 153 | 10 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA10497 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003617382.1 | 1e-104 | transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Swissprot | Q9SK55 | 7e-78 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | G7K3B6 | 1e-103 | G7K3B6_MEDTR; Putative transcription factor NAM family | ||||
STRING | AET00341 | 1e-104 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-80 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA10497 |