PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp_un0744_001

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 218aa MW: 25245.9 Da PI: 8.6207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp_un0744_001	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.6e-10	88	137	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r h + Er RR++ ++++ L +llP a +K +K +i+ekAv+ I +L+ Tp_un0744_001 88 RCRRHMMKERTRREKQKQSYLALHSLLPFA-----TKSDKNSIVEKAVDQIEKLE 137 6788************************.....89************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-12	82	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.75E-9	85	137	No hit	No description
PROSITE profile	PS50888	13.141	87	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-7	88	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-8	91	155	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-6	93	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDYFFLDSIC QEEEDKFWDL IAGDVSGNGD GDKTVSVPNR SAFRSYVKDT ELRMLSSSST 60 VNMKRRLVNL LRKNWEEKKN AAAPEKDRCR RHMMKERTRR EKQKQSYLAL HSLLPFATKS 120 DKNSIVEKAV DQIEKLEGIK KELERRMNVL EAKLAEDHDE MSGTKVRFNL QEPLCGIDSM 180 VEILQCLKSM GTKLKTVQAN FSRHEFSATM NIESQFII

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018467064.1	1e-127	PREDICTED: transcription factor bHLH92-like
Swissprot	Q9FIX5	1e-107	BH092_ARATH; Transcription factor bHLH92
TrEMBL	V4LXN5	1e-125	V4LXN5_EUTSA; Uncharacterized protein
STRING	XP_006403210.1	1e-126	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9602	25	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	1e-103	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]