PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un0674_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 34402.4 Da PI: 7.0441 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.7 | 3.4e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrF Ptdeel+v+yL++k++g +++l + i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ + Tp_un0674_001 14 LPPGFRFYPTDEELMVQYLCRKAAGYHFSL-QLIAEIDLYKFDPWVLPNKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-E 107 79**************************99.89***************8777899***********************************9999.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 g+ vg+kk Lvfy g+apkg+kt+W+mheyrl Tp_un0674_001 108 GKRVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-66 | 9 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.531 | 14 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MGIQETDPLA QLSLPPGFRF YPTDEELMVQ YLCRKAAGYH FSLQLIAEID LYKFDPWVLP 60 NKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGKR VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLI EPSRRNGSSK LDDWVLCRIY KKQSSAQKQV FENVITSTRE 180 LSNNGTSSTT SSSSHFDDVL DSIGDRNFQF SNSNRVSSLG PALTGEKTGF NGLGDMSSFD 240 WGGFVSNVDH NSSQELGLSH VVPNVEFNCG YLKTEEEFNN SNELAQNGYG VDSVGFGYSG 300 QVGGFGFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-121 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00012 | PBM | Transfer from AT1G52890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:12646039, ECO:0000269|PubMed:15319476}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966747 | 0.0 | KC966747.1 Brassica napus NAC transcription factor 19 (NAC19.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006392855.1 | 0.0 | NAC domain-containing protein 19 | ||||
Swissprot | Q9C932 | 0.0 | NAC19_ARATH; NAC domain-containing protein 19 | ||||
TrEMBL | V4MFR5 | 0.0 | V4MFR5_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.0124s0082.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 0.0 | NAC domain containing protein 19 |