PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0577_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 97aa    MW: 11077.7 Da    PI: 4.2959
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0577_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.58.2e-172066249
            NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                    pGf+F+Ptd el+++yLk+k++g + ++ e+i+evdiy++ePwdLp 
  Tp_un0577_001 20 FPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPEVDIYNFEPWDLPG 66
                   59************************999.89**************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-18968IPR003441NAC domain
PROSITE profilePS5100516.8421997IPR003441NAC domain
PfamPF023657.4E-72162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MDAAEVSRDT SLSMAVSTAF PGFKFSPTDI ELISYYLKRK MDGLERSVEI IPEVDIYNFE  60
PWDLPGSSPY LNFKPFSSSR FLKIILSFLC FEVGFET
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747636e-60KF974763.1 Brassica napus NAC transcription factor 60-1 (NAC60-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639422.12e-34PREDICTED: NAC domain-containing protein 60 isoform X1
RefseqXP_013639424.12e-34PREDICTED: NAC domain-containing protein 60 isoform X2
RefseqXP_013671957.12e-34NAC domain-containing protein 60 isoform X1
SwissprotQ94F582e-30NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A078G4K14e-33A0A078G4K1_BRANA; BnaC01g23890D protein
TrEMBLA0A0D3A8I04e-33A0A0D3A8I0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FDY04e-33A0A3P6FDY0_BRAOL; Uncharacterized protein
STRINGBo1g063720.17e-34(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79671340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.18e-33NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]