PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un0429_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 21521.6 Da PI: 8.9291 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.2 | 2.1e-06 | 88 | 121 | 1 | 37 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskK 37 r+r h + Er RR++ ++++ L +llP a ++ K Tp_un0429_001 88 RCRRHMMKERTRREKQKQSYLALHSLLPFA---TKAK 121 6788*************************9...4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.41E-6 | 82 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.40E-5 | 85 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MDYFFLDSIC QEEEDKFWDL IAGDVSGNGD GDKTVSVPNR SAFRSYVKDT ELRMLSSSST 60 VNMKRRLVNL LRKNWEEKKN AAAPEKDRCR RHMMKERTRR EKQKQSYLAL HSLLPFATKA 120 KLAEDHDEMS GTKVRFNLQE PLCGIDSMVE ILQCLKSMGT KLKTVQANFS RHEFSATMNI 180 ESQFII |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189402 | 1e-106 | AC189402.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB057L05, complete sequence. | |||
GenBank | AC189591 | 1e-106 | AC189591.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013D23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006403210.1 | 1e-101 | transcription factor bHLH92 | ||||
Swissprot | Q9FIX5 | 8e-85 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | A0A1J3EDG9 | 1e-100 | A0A1J3EDG9_NOCCA; Transcription factor bHLH92 (Fragment) | ||||
STRING | XP_006403210.1 | 1e-101 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-87 | bHLH family protein |
Publications ? help Back to Top | |||
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