PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0398_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 314aa    MW: 34832.4 Da    PI: 5.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0398_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14112163155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++     ++ + a+i+  A+++Ik+L+
  Tp_un0398_001 112 QRMTHIAVERNRRRQMNEHLNSLRSLMPPS---FLQRGDQASIVGGAIDFIKELE 163
                    79***************************9...89*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056447.0E-550209IPR008518FATE/Miff/Tango-11
CDDcd000832.49E-13110167No hitNo description
SuperFamilySSF474597.85E-17110182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.72111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-12112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-14112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEGLMRLGGL EEQFAQISED AIDEKIPFLQ MLQCIEPTLS TTEPNQILQS LLQIQTLGPE  60
SCLTLETIKR DPGLTEDPVK DPETENGAAT FKEKRKRKRT RAPKKKDEVE NQRMTHIAVE  120
RNRRRQMNEH LNSLRSLMPP SFLQRGDQAS IVGGAIDFIK ELEQLLQSLE AEKQSEGAGE  180
NPKTASSSSS SSRACTNSSV SSVSTTSEDG FTARFGGGET TEVEATLIQN HVSVKVRCKR  240
GKGQILRAIV SIENLKLSIL HLTISSSFDF VFYSFNLKIE DGCKVGSADE IATAVHQIFE  300
QINGELMWSN LSRT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112123RMTHIAVERNRR
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531010.0AK353101.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-16-P03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396347.10.0transcription factor bHLH57
SwissprotQ9M1281e-174BH057_ARATH; Transcription factor bHLH57
TrEMBLE4MX540.0E4MX54_EUTHA; mRNA, clone: RTFL01-16-P03
TrEMBLV4KIY20.0V4KIY2_EUTSA; Uncharacterized protein
STRINGXP_006396347.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146961721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01460.11e-143bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]