PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un0027_007
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Trihelix
Protein Properties Length: 255aa    MW: 28413.4 Da    PI: 10.8427
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un0027_007genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.34.8e-2464144286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt++e+l+Li+ ++e++ +++rg lk ++Wee+++++ ++ g+ rs++qC++k+e+l+kr+++++++++       s +p+++q+e
  Tp_un0027_007  64 WTQDETLLLIDSYKEKWYAIGRGPLKSNHWEEIAAAVsARSGVDRSATQCRHKIEKLRKRFRAERQSMGPI-----SIWPFYSQME 144
                    *************************************8899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-463116IPR009057Homeodomain-like
PfamPF138378.4E-2164146No hitNo description
PROSITE profilePS500906.88864121IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TPPQQNQPPS TSTPAQTPPP PQTTVVALAA STSAVARKTQ  60
PVLWTQDETL LLIDSYKEKW YAIGRGPLKS NHWEEIAAAV SARSGVDRSA TQCRHKIEKL  120
RKRFRAERQS MGPISIWPFY SQMEKLDSSN PAPISARPLT LGGGLLQWGQ KERSKRKRKD  180
EGGGDDGERR RKGARAVAFE IRAFAERVMV MEKKKMEFAK ETVKLRKEME IKRLKLIQSS  240
QAQLLQFLNT AFDSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176191KRKDEGGGDDGERRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013597572.11e-130PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A1J3CS391e-135A0A1J3CS39_NOCCA; Trihelix transcription factor ASIL2 (Fragment)
STRINGA0A087HCF31e-133(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.13e-65Trihelix family protein