PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g37430

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

Nin-like

Protein Properties

Length: 721aa MW: 80630.9 Da PI: 7.7145

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g37430	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.3e-28	452	503	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l+ l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Tp7g37430 452 AEKDITLDILRQHFAGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKIKKV 503 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	4.36E-7	210	362	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	3.0E-4	212	362	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.154	439	523	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-25	456	503	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.1E-20	628	715	No hit	No description
SuperFamily	SSF54277	8.5E-20	629	717	No hit	No description
PROSITE profile	PS51745	22.345	631	716	IPR000270	PB1 domain
SMART	SM00666	4.0E-23	631	716	IPR000270	PB1 domain
CDD	cd06407	1.97E-40	632	715	No hit	No description
Pfam	PF00564	5.0E-18	632	715	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MEESNNSGVV DFPDNFMDQL LWEEEEEASL SSPIGWKERV TCAMGHLQEV MGREKELLIQ 60 LWVPVERGGR RVLSTEEQPF SLNQSQSLLA LYRDVSAGYS FAAEAESDQL VGLPGRVFLR 120 RMPEWTPDVR LFRSEEYPRI GYARRYKVRA SLALPLFQGP SGNCLAVMEM VTTHHSLEYA 180 SQLHTICHAL QTFDLRSSKT SIIPTSLKSH TDDLHQEVAS ILQGICSSYG LPLAITWGQQ 240 QESCLSAIVS ACYTADQNSR CFLAVCSDHH LLAGEGIAGT AFATKKQCFA TDVAILSNWS 300 YPLSHYARMF DLHAALAVPL LTRRNRTVQF VLEFFIPRDC LHTHTQRLIL DSLASQLSLR 360 VQSSPHLMVD QEIRDTLTPL TADHSSGSAE QLVAEESPWI SRMTPEAKGK QVSVSWEYQR 420 DELKLGGGVR EPSFSLSPSS SSLQNRKRKT KAEKDITLDI LRQHFAGSLK DAAKNIGVCP 480 TTLKRICRQH GISRWPSRKI KKVGHSLRKL QVVMDSVEGV QGSLHLASFY SSFPQLQSSS 540 SSSSFSLLNP TQTVHMPTKS LPPSSGTQSS SGSSTCCSFE EQQLGGFHKP ALSHPQLLTL 600 SSLQEEQRPV RVTSSLPPLP SPKAPRKAKD GMKVKAMFGD SKMMMSLQPH WRVTDLRREI 660 AKRFGMDDVL RSNVNLKYLD DDQEWVLLTC DADLEECIQV YKTSLKETIR ILVHHPLSSF 720 L

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MEESNNSGVV DFPDNFMDQL LWEEEEEASL SSPIGWKERV TCAMGHLQEV MGREKELLIQ  60
LWVPVERGGR RVLSTEEQPF SLNQSQSLLA LYRDVSAGYS FAAEAESDQL VGLPGRVFLR  120
RMPEWTPDVR LFRSEEYPRI GYARRYKVRA SLALPLFQGP SGNCLAVMEM VTTHHSLEYA  180
SQLHTICHAL QTFDLRSSKT SIIPTSLKSH TDDLHQEVAS ILQGICSSYG LPLAITWGQQ  240
QESCLSAIVS ACYTADQNSR CFLAVCSDHH LLAGEGIAGT AFATKKQCFA TDVAILSNWS  300
YPLSHYARMF DLHAALAVPL LTRRNRTVQF VLEFFIPRDC LHTHTQRLIL DSLASQLSLR  360
VQSSPHLMVD QEIRDTLTPL TADHSSGSAE QLVAEESPWI SRMTPEAKGK QVSVSWEYQR  420
DELKLGGGVR EPSFSLSPSS SSLQNRKRKT KAEKDITLDI LRQHFAGSLK DAAKNIGVCP  480
TTLKRICRQH GISRWPSRKI KKVGHSLRKL QVVMDSVEGV QGSLHLASFY SSFPQLQSSS  540
SSSSFSLLNP TQTVHMPTKS LPPSSGTQSS SGSSTCCSFE EQQLGGFHKP ALSHPQLLTL  600
SSLQEEQRPV RVTSSLPPLP SPKAPRKAKD GMKVKAMFGD SKMMMSLQPH WRVTDLRREI  660
AKRFGMDDVL RSNVNLKYLD DDQEWVLLTC DADLEECIQV YKTSLKETIR ILVHHPLSSF  720
L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g37430

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069558	0.0	AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL035539	0.0	AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006411620.1	0.0	protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	V4MK94	0.0	V4MK94_EUTSA; Uncharacterized protein
STRING	XP_006411620.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]