PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G38340.1 | ||||||||
Common Name | F22I13.110, NLP3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Nin-like | ||||||||
Protein Properties | Length: 767aa MW: 85066.7 Da PI: 8.1351 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.4 | 2.8e-28 | 495 | 546 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ AT4G38340.1 495 AEKDITLDTLRQHFAGSLKDAAKNIGVCPTTLKRICRQNGISRWPSRKIKKV 546 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 6.73E-5 | 350 | 410 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.086 | 482 | 566 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.6E-25 | 499 | 546 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.21E-20 | 668 | 761 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.8E-19 | 670 | 757 | No hit | No description |
PROSITE profile | PS51745 | 24.592 | 673 | 759 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.2E-25 | 673 | 759 | IPR000270 | PB1 domain |
Pfam | PF00564 | 4.2E-19 | 674 | 758 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.29E-40 | 674 | 758 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006107 | Biological Process | oxaloacetate metabolic process | ||||
GO:0006108 | Biological Process | malate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0050152 | Molecular Function | omega-amidase activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
MVGPFKKILH AHNQRFPPSS SSSLDPVVDD SSRKQTRIIL SYLLHLSLSL HITYSLCLLH 60 FFFGSSNPFS PMEESNNSAV VDFPDNFMDQ LLWEECWEEE ATQHDQALSS PSGLKERVAC 120 AMGHLQEVMG ERELLIQLWV PVETRSGRVL STEEQPYSIN TFSQSQSLAL YRDASAGYSF 180 AAEVGSEQLV GLPGRVFLRR MPEWTPDVRF FRKEEYPRIG YARRYQVRAT LALPLFQGTS 240 GNCVAVMEMV TTHRNLEYAS QLSTICHALE AFDLRTSQTS IVPASLKVTS SSSSSSRTEV 300 ASILQGICSS HGLPLAVTWG HQDSSSCLSA LISASYAADH GSRCFLAACS EHHLLGGEGI 360 AGRAFATKKQ CFATDVAIFS KWSYPLSHYA KMFDLHAALA VPILTRGNRT VQFVLELFFP 420 RDCLDIQTHS LTLASQLKLR FQSSPHLMVD DNQIAEEVRD AATPPLTQED PKGKQVSFSF 480 SSASSLENRK RKTKAEKDIT LDTLRQHFAG SLKDAAKNIG VCPTTLKRIC RQNGISRWPS 540 RKIKKVGHSL RKLQVVMDSV EGVQGSLHLA SFYSSFPQLQ SSSSSSFPFI NPTQTVHVPP 600 KSPPSSSGSQ SSSGSSTCCS SEEQQLGGFQ KPALSHPQLL TLSSMHEDQR PVRVTSSLPP 660 LPSATTPRKA KDGMKVKAMF GDSMLRMSLL PHSRLTDLRR EIAKRFGMDD VLRSNFSLKY 720 LDDDQEWVLL TCDADLEECI QVYKSSSLKE TIRILVHHPL SRPSFGS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18420220 | 0.0 | ||||
Genevisible | 253036_at | 0.0 | ||||
Expression Atlas | AT4G38340 | - | ||||
AtGenExpress | AT4G38340 | - | ||||
ATTED-II | AT4G38340 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G38340.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G38340 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069558 | 0.0 | AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence. | |||
GenBank | AL035538 | 0.0 | AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project). | |||
GenBank | AL035539 | 0.0 | AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project). | |||
GenBank | AL161593 | 0.0 | AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195547.1 | 0.0 | Plant regulator RWP-RK family protein | ||||
Swissprot | Q9SVF1 | 0.0 | NLP3_ARATH; Protein NLP3 | ||||
TrEMBL | A0A1P8B7T2 | 0.0 | A0A1P8B7T2_ARATH; Plant regulator RWP-RK family protein | ||||
STRING | AT4G38340.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15287 | 17 | 18 | Representative plant | OGRP299 | 16 | 97 |
Link Out ? help Back to Top | |
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Phytozome | AT4G38340.1 |
Entrez Gene | 829991 |
iHOP | AT4G38340 |
wikigenes | AT4G38340 |
Publications ? help Back to Top | |||
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