PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp7g35390

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

GRF

Protein Properties

Length: 536aa MW: 58452.6 Da PI: 8.8772

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp7g35390	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.5	6.4e-25	229	272	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Tp7g35390 229 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 272 79***************************************998 PP
2	QLQ	54.3	4.1e-19	165	201	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll iqk Tp7g35390 165 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIQK 201 59*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.1E-12	165	201	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.884	166	201	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.6E-13	166	200	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.77	229	273	IPR014977	WRC domain
Pfam	PF08879	3.5E-21	230	272	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008285	Biological Process	negative regulation of cell proliferation
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 536 aa Download sequence Send to blast
MDIETHILGS VTSNVNGSSS LKELGGSKQD RSGFDGEDCL QRSSKLARTT TTIPEDDNFS 60 SSYAAAYSKT MPFHQGIPLM SMRSASLLSP DSRRQEHMLS FSDKPEAHDF TKYVGLDNNN 120 NNKNSLSPFL HQIPPPYCRS SGGGYGSGGV MMNMSMQGNF TGVKGPFTLT QWAELEQQAL 180 IYKYITANVP VPSSLLISIQ KSFYPYGSLP PSSFGWGTFH LGFAGGNMDP EPGRCRRTDG 240 KKWRCSRDAV PDQKYCERHI NRGRHRSRKP VEVQSGQTAA AAASKAVTTP QQSVVAGGSN 300 RSNARASRNR SLGTGAQYIN PSIDSLPNNR VRDTLGSSVY PSTVNLQPKE SPIAHQKQRN 360 NNPFEFGHIS SDLLLDSNSA KSYASSYLDF SSNQDKHSGN HNQNSWPEEL KSDWTQLSMS 420 IPIASPPSST HNSAQDKMTL SPLRLSREFD LSSHNEQETL EPARKVNTLI PISWGNSLGG 480 PLGEVLNSTT NSPTLGSSPT GVLQKSTFCS LSNSSSVSSP IAENNRNNGD YFHYTT

Sequence ? help Back to Top

Protein Sequence Length: 536 aa Download sequence Send to blast

MDIETHILGS VTSNVNGSSS LKELGGSKQD RSGFDGEDCL QRSSKLARTT TTIPEDDNFS  60
SSYAAAYSKT MPFHQGIPLM SMRSASLLSP DSRRQEHMLS FSDKPEAHDF TKYVGLDNNN  120
NNKNSLSPFL HQIPPPYCRS SGGGYGSGGV MMNMSMQGNF TGVKGPFTLT QWAELEQQAL  180
IYKYITANVP VPSSLLISIQ KSFYPYGSLP PSSFGWGTFH LGFAGGNMDP EPGRCRRTDG  240
KKWRCSRDAV PDQKYCERHI NRGRHRSRKP VEVQSGQTAA AAASKAVTTP QQSVVAGGSN  300
RSNARASRNR SLGTGAQYIN PSIDSLPNNR VRDTLGSSVY PSTVNLQPKE SPIAHQKQRN  360
NNPFEFGHIS SDLLLDSNSA KSYASSYLDF SSNQDKHSGN HNQNSWPEEL KSDWTQLSMS  420
IPIASPPSST HNSAQDKMTL SPLRLSREFD LSSHNEQETL EPARKVNTLI PISWGNSLGG  480
PLGEVLNSTT NSPTLGSSPT GVLQKSTFCS LSNSSSVSSP IAENNRNNGD YFHYTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:21036927}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp7g35390

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_195488.2	0.0	growth-regulating factor 2
Swissprot	Q8L8A8	0.0	GRF2_ARATH; Growth-regulating factor 2
TrEMBL	A0A178UXW8	0.0	A0A178UXW8_ARATH; GRF2
STRING	AT4G37740.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	0.0	growth-regulating factor 2

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]