PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g33840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 156aa MW: 18113 Da PI: 10.1421 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 14 | 61 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N+ f eL l ++ +K +Ka+iL ++e +k+L Tp7g33840 14 IQKADREKIRRDKLNEQFLELGNALDPN----RPKSDKASILIDTIEILKDL 61 56789********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.91E-6 | 10 | 65 | No hit | No description |
PROSITE profile | PS50888 | 12.932 | 11 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 11 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 11 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.9E-7 | 14 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-7 | 17 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MVELKKEPLS SRKIQKADRE KIRRDKLNEQ FLELGNALDP NRPKSDKASI LIDTIEILKD 60 LMTQVNKLKA EYVTLSQESR ELIQEKSELR EEKTSLKSDI EILNSQYQHR VRTMVPWIPH 120 YTYPIPVVAR TQGPVSIQHL SSSSSVTTRI KKMMLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g33840 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024005285.1 | 1e-82 | transcription factor bHLH11 | ||||
Swissprot | Q8W2F2 | 6e-71 | BH011_ARATH; Transcription factor bHLH11 | ||||
TrEMBL | V4P2B3 | 5e-82 | V4P2B3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006412028.1 | 8e-83 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2353 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36060.2 | 2e-73 | bHLH family protein |
Publications ? help Back to Top | |||
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