PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G36060.2 | ||||||||
Common Name | bHLH11, EN137, T19K4.190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 268aa MW: 29992.8 Da PI: 6.8007 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.3e-07 | 31 | 75 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + erE+ RRd++++ f eL l ++ +K +Ka++L+ +++ +k+ AT4G36060.2 31 KAEREKLRRDKLKEQFLELGNALDPN----RPKSDKASVLTDTIQMLKD 75 689********************997....79************99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.11E-13 | 26 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.255 | 26 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-11 | 30 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.9E-5 | 30 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-5 | 32 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.68E-4 | 33 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MAVSCLFIVS SNYRGAEMVV EVKKEAVCSQ KAEREKLRRD KLKEQFLELG NALDPNRPKS 60 DKASVLTDTI QMLKDVMNQV DRLKAEYETL SQESRELIQE KSELREEKAT LKSDIEILNA 120 QYQHRIKTMV PWVPHYSYHI PFVAITQGQS SFIPYSASVN PLTEQQASVQ QHSSSSADAS 180 MKQDSKIKPL DLDLMMNSNH SGQGNDQKDD VRLKLELKIH ASSLAQQDVS GKEKKVSLTT 240 TASSSNSYSL SQAVQDSSPG TVNDMLKP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 22329203 | 0.0 | ||||
Genevisible | 253127_at | 1e-135 | ||||
Expression Atlas | AT4G36060 | - | ||||
AtGenExpress | AT4G36060 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed consitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G36060.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT1G14920 | |||||
IntAct | Search Q8W2F2 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G36060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY090362 | 0.0 | AY090362.1 Arabidopsis thaliana AT4g36060/T19K4_190 mRNA, complete cds. | |||
GenBank | BT000535 | 0.0 | BT000535.1 Arabidopsis thaliana putative Myc-type transcription factor (At4g36060/T19K4_190) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195330.2 | 0.0 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q8W2F2 | 0.0 | BH011_ARATH; Transcription factor bHLH11 | ||||
TrEMBL | A0A178V1N5 | 0.0 | A0A178V1N5_ARATH; BHLH11 | ||||
STRING | AT4G36060.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G36060.2 |
Entrez Gene | 829762 |
iHOP | AT4G36060 |
wikigenes | AT4G36060 |