PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g33060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C2H2
Protein Properties Length: 292aa    MW: 32018.1 Da    PI: 8.9137
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g33060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0017168190123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k+F ++  L  H  +H
  Tp7g33060 168 FECGGCKKVFGSHQALGGHRASH 190
                89************999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.2E-781105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.59881108IPR007087Zinc finger, C2H2
SMARTSM003550.0281103IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.07E-882103No hitNo description
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576675.07E-8163190No hitNo description
PfamPF139121.2E-7167191IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66168195IPR007087Zinc finger, C2H2
SMARTSM003553168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725229256IPR007087Zinc finger, C2H2
SMARTSM003550.32229251IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-10230253IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTSNNSDSDP NFHNPLPPTS NATIPIFPNP NLQLALSPSY DQSPRRKRTK TVALSSSSSP  60
KSTPKPKYPK KPDPNAPKIT RPCTECGKKF WSWKALFGHM RCHPERQWRG INPPPNHRGP  120
TAASSSKQLN QRSPNWVSLM TEEDHEVASY LLMLSDSTPL SSSSGERFEC GGCKKVFGSH  180
QALGGHRASH KNVKGCFAIT NVTDDPMTVT TTSSDQDLQG KIVAFSGHQK CSICFRVFSS  240
GQALGGHMRC HWEKEGDTMV GGALDLNVPA TIQQDLCPSD TSECSLDLRL RL
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g33060
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006412124.11e-174zinc finger protein ZAT3
SwissprotO654991e-151ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLV4MEC61e-173V4MEC6_EUTSA; Uncharacterized protein
STRINGXP_006412124.11e-173(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46191836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-134C2H2-like zinc finger protein