PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g27110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 359aa    MW: 40345.1 Da    PI: 6.3978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g27110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.4e-08124144526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C++f++ G Ck Gd+C FaHg
  Tp7g27110 124 ACPDFRK-GGCKKGDSCEFAHG 144
                7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.3E-6119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.826119146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6123146IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6124144IPR000571Zinc finger, CCCH-type
SMARTSM003560.53154177IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.568154178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MMIGETRRTY PTVEIPTWPV SEDFPPAEIF SPAMNSPDIS MLEALAALQR YLPSNEPDTD  60
SDTDLFGPDS PIDAYSCDHF RMYDFKVRRC ARGRSHDWTE CPYAHPGEKA RRRDPRKYSY  120
SGTACPDFRK GGCKKGDSCE FAHGVFECWL HPARYRTQPC KDGGNCRRRV CFFAHSPDQL  180
RYLPNRSPDR VDSFDVSSPI RHSCGRAFQL SVSPVSGSPP MSPRADSETQ SLSRSLGSSS  240
INDVVASFRN LQFEKVKSFP PSYNNPLRCY QSGFGSPRGS ILGPGFQSLP TTPTRPGNLD  300
IWENGLEEEP AMERIVESGR ELRAKMFEKL SKENCVDRVE PDQNSGEAPD VGWVSELVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g27110
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528160.0AK352816.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670830.10.0zinc finger CCCH domain-containing protein 49-like
RefseqXP_022560177.10.0zinc finger CCCH domain-containing protein 49-like
SwissprotQ9M0G20.0C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLV4P4C30.0V4P4C3_EUTSA; Uncharacterized protein
STRINGXP_006412868.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.10.0C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]