PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g26810
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 454aa    MW: 49814.3 Da    PI: 7.1116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g26810genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.8e-15272319355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++hn+ E+rRR++iN+++  L+el+P +      K +Ka++L  A+eY+ksLq
  Tp7g26810 272 EMHNISEKRRREKINEKMKVLQELIPRC-----NKSDKASMLDDAIEYVKSLQ 319
                68*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-19266327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.81E-16267323No hitNo description
PROSITE profilePS5088817.974269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.4E-13272319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-21273327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-16275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MGPYWGEDDI VELLWKRGRV VRSSQTQSLS VPPPDPILRG SGSGGGDGNA PLPPLPSHHQ  60
PSDQNLFIRE DEMASWLHHP LRQDELYSHL FYSGTVSTPF THPQGTVSLP PPPPSALHIP  120
MAERPMGQVI SGRRAENFVN FSRLSMNLYT GGRVEPAGSW VPVVRDSMQV GSSAPPPSSA  180
TESCLTPATV TGGVWKTFAV PSLNRKAIET VCDIAGPSSS GVSKTETESI QIKPATETET  240
ADDKKRKERE ETEETAEEAR GSTSRKRSRA TEMHNISEKR RREKINEKMK VLQELIPRCN  300
KSDKASMLDD AIEYVKSLQM QIQMMSTGGG GMMPMMLTAN MQGFMPNTAI MEMMGVNRPP  360
FIPFPGTPFP RVAHTASPGP SNPAPPYHFP NIQAFDPVSN QPQFPGYLNP YSQFVGLHQM  420
QQPPPLQNQT TAQLSFSQAS SSKEPEDQGK KPTC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264281RKRSRATEMHNISEKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g26810
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129259.10.0PREDICTED: putative transcription factor bHLH056
SwissprotQ9SVU71e-146BH056_ARATH; Putative transcription factor bHLH056
TrEMBLA0A398ARK71e-175A0A398ARK7_BRACM; Uncharacterized protein (Fragment)
STRINGBo1g017080.11e-167(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM90411635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-105bHLH family protein