PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g23490
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 435aa    MW: 47242.7 Da    PI: 7.706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g23490genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08107129326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++lC+f+   G C+yGd+C++ H+
  Tp7g23490 107 EKLCKFWVD-GNCPYGDKCRYLHC 129
                579******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.3432854IPR000571Zinc finger, CCCH-type
SMARTSM003560.133053IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.685104131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-6104128IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6106130IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-6107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-7108126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.6E-16127242IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003203.9E-6135174IPR001680WD40 repeat
SuperFamilySSF509785.95E-47135429IPR017986WD40-repeat-containing domain
PfamPF004001.9E-4138174IPR001680WD40 repeat
PROSITE profilePS5008213.316142183IPR001680WD40 repeat
PROSITE profilePS5029420.725142344IPR017986WD40-repeat-containing domain
PRINTSPR003201.8E-6161175IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780161175IPR019775WD40 repeat, conserved site
SMARTSM003206214251IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.1E-31243425IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0018258295IPR001680WD40 repeat
PfamPF004000.064263295IPR001680WD40 repeat
PROSITE profilePS5008211.945265304IPR001680WD40 repeat
PRINTSPR003201.8E-6282296IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4298335IPR001680WD40 repeat
PfamPF004000.0028300334IPR001680WD40 repeat
PRINTSPR003201.8E-6322336IPR020472G-protein beta WD-40 repeat
SMARTSM0032014339382IPR001680WD40 repeat
SMARTSM003209385422IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDLDMNGGNK RAFQRLGGSN RPTTAPKDSN QKVCFLWQAG RCNRYPCPFL HRELPGPGPG  60
FAGSSTNKRI ADESGFAGPS HRRGPGYSGS GNSWGRFGGN RTVTKTEKLC KFWVDGNCPY  120
GDKCRYLHCW SKGDSFSLLT QLDGHQKVVT GIALPSGSDK LYTASKDETV RIWDCASGQC  180
TGVLNLGGEV GCMISEGPWL LVGMPNLVKA WNIENKADLS LTGPVGQVYS LVVGTDLLFA  240
GMQDGSILVW RYNIATSNFD PAASLKGHTL AVVSLYVGAN RLYSGSMDNS IKVWSLDNLQ  300
CIQTLTEHTS VVMSLICWDQ FLLSCSLDNT VKIWAATEGG NLEVTYTHKE EYGVLALCGV  360
HDAEAKPVLL CSCNDNSLHL YDLPSFTGRG KILAKQEIRS IQIGPGGLFF TGDGTGQVKV  420
WKCTTEPTLK RETEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-211394308322Tako8
6g6n_A2e-211394308322Tako8
6g6n_B2e-211394308322Tako8
6g6n_C2e-211394308322Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g23490
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283770.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_023635451.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLR0GZR90.0R0GZR9_9BRAS; Uncharacterized protein
STRINGBostr.7867s0357.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1