PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g23430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24522.8 Da PI: 9.5895 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.8e-09 | 44 | 93 | 2 | 53 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h +Er+RR+++ f+ Lr++lP ++K ++ + Av++Ik+ Tp7g23430 44 KLLHRDIERQRRQEMAALFASLRTHLPLqY---IKGKRAVSDHVNGAVNFIKD 93 6679************************66...9999999***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.29E-11 | 39 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.50E-8 | 40 | 93 | No hit | No description |
PROSITE profile | PS50888 | 11.42 | 42 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 44 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.5E-7 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDPYQNPNPK AYQRQRPFGS AGDGGSSGGS DMPHETAENK KKKKLLHRDI ERQRRQEMAA 60 LFASLRTHLP LQYIKGKRAV SDHVNGAVNF IKDTETRIKE LSARKDELSR ETCRRYQTNP 120 DPARTAPEFS KSDPASVMVQ PCVSGFEVAV SSNSSGPEAL PLSRVLEALQ EKGLEVISSL 180 TTRVNERLMH TIKVEVLLQH AMSIEINLGF SLYLAIYNTG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g23430 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010433644.1 | 1e-111 | PREDICTED: transcription factor bHLH126-like isoform X1 | ||||
Swissprot | Q9STJ6 | 5e-99 | BH126_ARATH; Transcription factor bHLH126 | ||||
TrEMBL | A0A3P6EWZ8 | 1e-106 | A0A3P6EWZ8_BRAOL; Uncharacterized protein | ||||
STRING | XP_010433644.1 | 1e-111 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25410.1 | 1e-102 | bHLH family protein |