PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g23420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | bHLH | ||||||||
Protein Properties | Length: 166aa MW: 19010.1 Da PI: 8.3183 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.1 | 8.5e-15 | 3 | 54 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + +h e+E++RR+++ s ++ Lr+llP + ++K s ++ L +Av+YIk+ q Tp7g23420 3 KIMHREVEKQRRQEMASLYASLRSLLPLEF--IQGKRSTSDQLNEAVNYIKYVQ 54 568*************************65..********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.554 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.53E-10 | 3 | 58 | No hit | No description |
SuperFamily | SSF47459 | 3.01E-13 | 3 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-12 | 4 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-12 | 5 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-6 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEKIMHREVE KQRRQEMASL YASLRSLLPL EFIQGKRSTS DQLNEAVNYI KYVQRNIKDM 60 NSKRDDLMLL SGRSCGSKSE QGRNENPNHF VIRPSLVGVE IVFSILQTPL SSVLQVLCEH 120 GLCVLSCISF NVNDRLIYTL QAEVNDKAII DFAYLKDTLI TLTLMK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g23420 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018480741.1 | 3e-88 | PREDICTED: transcription factor bHLH118-like | ||||
Swissprot | Q9STJ7 | 7e-82 | BH118_ARATH; Transcription factor bHLH118 | ||||
TrEMBL | A0A1J3IUJ1 | 2e-85 | A0A1J3IUJ1_NOCCA; Uncharacterized protein | ||||
STRING | Bo7g110280.1 | 3e-83 | (Brassica oleracea) | ||||
STRING | XP_010448440.1 | 5e-84 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25400.1 | 3e-84 | bHLH family protein |