PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G25400.1 | ||||||||
Common Name | BHLH118, EN5, T30C3.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 163aa MW: 18694.6 Da PI: 7.5729 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.2 | 1.7e-14 | 5 | 54 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+e+E+rRR+++ s ++ Lr+llP + ++K s ++ ++ Av+YI +Lq AT4G25400.1 5 VHKEIEKRRRQEMASLYASLRSLLPLEF--IQGKRSTSDQVKGAVNYIDYLQ 54 6*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.995 | 1 | 53 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-12 | 3 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.64E-9 | 3 | 58 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-11 | 4 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-11 | 5 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-6 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MEKLVHKEIE KRRRQEMASL YASLRSLLPL EFIQGKRSTS DQVKGAVNYI DYLQRNIKDI 60 NSKRDDLVLL SGRSFRSSNE QEWNEISNHV VIRPCLVGIE IVLSILQTPF SSVLQVLREH 120 GLYVLGYICS SVNDRLIHTL QAEVNDLALI DLADLKDTLT LMK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.32261 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G25400 | |||||
AtGenExpress | AT4G25400 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G25400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G25400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY142621 | 0.0 | AY142621.1 Arabidopsis thaliana unknown protein (At4g25400) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194270.2 | 1e-115 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9STJ7 | 1e-117 | BH118_ARATH; Transcription factor bHLH118 | ||||
TrEMBL | A0A2H1ZEP9 | 1e-114 | A0A2H1ZEP9_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
TrEMBL | C0SVJ6 | 1e-114 | C0SVJ6_ARATH; Uncharacterized protein At4g25400 (Fragment) | ||||
STRING | AT4G25400.1 | 1e-115 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 | Representative plant | OGRP1638 | 8 | 38 |
Link Out ? help Back to Top | |
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Phytozome | AT4G25400.1 |
Entrez Gene | 828643 |
iHOP | AT4G25400 |
wikigenes | AT4G25400 |
Publications ? help Back to Top | |||
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