PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g23230
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family GeBP
Protein Properties Length: 376aa    MW: 41321.6 Da    PI: 4.9161
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g23230genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.53.4e-32158258198
     DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskkiW 96 
                k+fqrl+se+Dei++LqG++df++++g +p++++daf+++vk  i+f++sk q+v+K++r KkKf ++vk+     k++++++ sk+ dqk+fels+ iW
  Tp7g23230 158 KMFQRLFSETDEIAMLQGFLDFTSTRG-DPYENMDAFCDYVKTLIDFNASKAQIVTKLQRCKKKFANMVKNslkkGKTEDKIKCSKDLDQKAFELSREIW 256
                58*************************.9**************************************9998887789999******************** PP

     DUF573  97 gs 98 
                g+
  Tp7g23230 257 GT 258
                95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-26160257IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAPKQADKIE NPPIASSSEE EEEESGSSGQ ESESSDDEAG GDVLSKLTQK TVALAAAKKP  60
ESDSEEGESN SDSDSDSEPA TKTKPLNTVV TKPMPETSGS AAAVTLPESS TAKRSLKEAD  120
DEPKKKLKIS TTEQVKKKPA TTTADEEVKK ISGEEAKKMF QRLFSETDEI AMLQGFLDFT  180
STRGDPYENM DAFCDYVKTL IDFNASKAQI VTKLQRCKKK FANMVKNSLK KGKTEDKIKC  240
SKDLDQKAFE LSREIWGTNG VLPARPRTKS KEIKLLPLPK QEEEMEKPMA SAVITHLSSS  300
REMASFFKAE NVTVFGLDES TVSAVWDMVE DGPKKREMEE KLKKLKATQV ELCLLRSALV  360
DDTAKTIFKD NASSSC
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g23230
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024005322.11e-170LOW QUALITY PROTEIN: GLABROUS1 enhancer-binding protein-like
SwissprotQ9SB421e-112STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A1J3D6E61e-164A0A1J3D6E6_NOCCA; Mediator-associated protein 1
STRINGBo7g110050.11e-163(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-105DNA-binding storekeeper protein-related transcriptional regulator