PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19740
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LSD
Protein Properties Length: 159aa    MW: 17562 Da    PI: 5.3003
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19740genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD147.23.6e-157195125
    zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
               Cg+Cr lLsYPrGA++V+C++C+tV
  Tp7g19740 71 CGSCRRLLSYPRGAKHVKCSCCQTV 95
               ************************9 PP
2zf-LSD145.71.1e-14109133125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                C++C+ lL+YP+GApsVRC++C+ V
  Tp7g19740 109 CSNCKLLLMYPYGAPSVRCSSCNSV 133
                ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.7E-196898IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-127195IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-11106134IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-12109133IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MIAEAETEVV VEEIQTQKKE EQKHHEEEEE EEGPPPGWES AVIPPPISTI TTPVNSTTTA  60
AEIPEMAQMV CGSCRRLLSY PRGAKHVKCS CCQTVNLVLE AYQVGQVSCS NCKLLLMYPY  120
GAPSVRCSSC NSVTDIKENN KRRPWSVQQG PPKTLSSVR
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19740
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0117601e-135BT011760.1 Arabidopsis thaliana At4g21610 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108490.15e-79PREDICTED: protein LOL2
SwissprotO654266e-71LOL2_ARATH; Protein LOL2
TrEMBLA0A397YBR32e-76A0A397YBR3_BRACM; Uncharacterized protein
STRINGBra020902.1-P2e-73(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136112226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.15e-60lsd one like 2