PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g17540
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family HSF
Protein Properties Length: 691aa    MW: 80536.4 Da    PI: 6.4279
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g17540genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.11.2e-13241142100
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y +++d++++++isw  +g+sf+v+++ +  +++ p+    + fa F R     gF+k+++  +         eF+ + F +gk elleki 
     Tp7g17540  24 FVSKVYAMVDDSSTDSIISWGPTGDSFIVWNPAKCCRELFPRLLGITDFARFQRSESFLGFTKIESGPQ--------LEFTMDDFVRGKPELLEKIG 112
                   9***************************************************************99885........6******************8 PP

                   XX CS
  HSF_DNA-bind  99 rk 100
                   ++
     Tp7g17540 113 QR 114
                   76 PP
2HSF_DNA-bind47.83.9e-155266141101
                   HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
  HSF_DNA-bind   1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                   +Fl+k y +++d+++++liswse+g+sf+v+++ e  +++Lp+  + +nf       n+YgF++ +           + eF+   F +gk ell ki
     Tp7g17540 526 EFLEKAYAMVDDPSTDSLISWSEDGKSFIVWHQAECCRNLLPRLLRITNFR----MFNTYGFRRREYGG--------LLEFTSGDFVRGKPELLVKI 610
                   69***********************************************95....55*****9877665........58***************999 PP

                   XXXX CS
  HSF_DNA-bind  98 krkk 101
                     ++
     Tp7g17540 611 VERR 614
                   7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-1915108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-1720111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-2120114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.3E-1524113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.1E-19522608IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-20523613IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.39E-17525611IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.3E-15527612IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-5527550IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-5565577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MWQDTNPFAP KDPLTPTRNK VFDFVSKVYA MVDDSSTDSI ISWGPTGDSF IVWNPAKCCR  60
ELFPRLLGIT DFARFQRSES FLGFTKIESG PQLEFTMDDF VRGKPELLEK IGQRYVARLN  120
AHHEAKVKPL HDRLRNCKNR KEQRLVFKEN YERIERERRE RMDKVLAKEI DFLVKRIAKE  180
RNTREEGVLS KDVEDRLQLL LDLYEQNYNS SLKLRKMDDE LEEARTTVME DIDEFTDKTY  240
ETLLAYLLQE NDVSNLQKAL RFLEIMGAAI TNPNNFGEMN LDGMLELQET RQEALQHLDT  300
FANSTIPELR NYINEEANIE NLLRAVIELH LMDDKTNPAD QAGTLEPMVL HFNSIVVRST  360
LLICLTAPLN QMNRDPLSKQ TKMFKSHLEE KENIKTRTHE DAKSQMTIQS PCEKPFLRLL  420
HTSCAFTPLT LLPPRRKLPV KLGALKDCFE EDGSRGVGRH HDQHRISVCV CPLTHIIGVM  480
ENVQVRAAAI LALRPHACEE HADMEVENLG DDLKALGKMS RKYLVEFLEK AYAMVDDPST  540
DSLISWSEDG KSFIVWHQAE CCRNLLPRLL RITNFRMFNT YGFRRREYGG LLEFTSGDFV  600
RGKPELLVKI VERRVEERKE YCTSKVKPLL DRLKSCKNQE EKDLVMEEQS KKRDRELMEI  660
VDKAYAREID DLMKRIEYEK KTREVKDPVI Y
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g17540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142121123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.19e-19heat shock factor 1